Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68298 | Canola | cytosol | 84.28 | 88.17 |
| Bra003910.1-P | Field mustard | cytosol | 81.33 | 87.57 |
| CDY36678 | Canola | cytosol | 83.29 | 87.15 |
| Bra016111.1-P | Field mustard | cytosol | 85.01 | 86.72 |
| CDX72834 | Canola | cytosol | 84.28 | 86.18 |
| CDX96351 | Canola | cytosol | 84.28 | 85.96 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 64.62 | 67.26 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 64.62 | 66.92 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 63.15 | 64.74 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 62.9 | 64.48 |
| GSMUA_Achr11P... | Banana | cytosol | 53.32 | 62.9 |
| KRG91764 | Soybean | cytoskeleton, cytosol, nucleus | 60.2 | 62.66 |
| KRH37298 | Soybean | cytosol | 52.58 | 56.46 |
| Os03t0685600-01 | Rice | cytosol | 53.32 | 55.08 |
| KXG26924 | Sorghum | cytoskeleton, cytosol, nucleus | 52.58 | 53.77 |
| TraesCS1A01G358200.1 | Wheat | cytoskeleton, cytosol, nucleus | 28.75 | 53.18 |
| KRH35009 | Soybean | cytosol | 17.94 | 52.9 |
| TraesCS1D01G363000.1 | Wheat | cytosol | 50.61 | 52.28 |
| TraesCS2D01G129200.1 | Wheat | cytoskeleton, cytosol, nucleus | 50.86 | 52.27 |
| TraesCS2A01G126700.2 | Wheat | cytoskeleton, cytosol, nucleus | 50.86 | 52.14 |
| TraesCS1B01G374800.1 | Wheat | cytosol | 49.88 | 51.52 |
| HORVU3Hr1G013230.4 | Barley | cytosol | 48.4 | 49.25 |
| Zm00001d041945_P003 | Maize | cytosol | 51.11 | 48.94 |
| TraesCS2B01G148600.2 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole | 50.12 | 42.06 |
| Zm00001d011779_P005 | Maize | cytosol | 50.37 | 41.84 |
| HORVU2Hr1G022250.4 | Barley | mitochondrion | 50.12 | 41.13 |
| AT4G02730.1 | Thale cress | cytosol | 19.9 | 24.32 |
| AT3G49660.1 | Thale cress | cytosol | 17.94 | 23.03 |
| HORVU5Hr1G075920.16 | Barley | nucleus | 40.54 | 22.45 |
| AT2G43770.1 | Thale cress | cytosol | 18.18 | 21.57 |
| AT5G64730.1 | Thale cress | cytosol | 14.74 | 20.07 |
| AT5G52820.1 | Thale cress | cytosol | 20.88 | 17.97 |
| AT4G15900.1 | Thale cress | cytosol | 16.71 | 13.99 |
| AT5G50230.1 | Thale cress | cytosol | 16.95 | 13.56 |
| AT3G16650.1 | Thale cress | cytosol | 15.48 | 13.15 |
| AT5G13480.2 | Thale cress | nucleus | 16.71 | 10.35 |
| AT5G08390.1 | Thale cress | cytosol | 18.43 | 8.94 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 17.44 | 8.48 |
| AT1G11160.1 | Thale cress | cytosol | 17.69 | 7.05 |
| AT1G61210.1 | Thale cress | cytosol | 17.94 | 6.18 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:843514 | UniProt:A0A178WIN8 | ProteinID:AEE35239.1 | ArrayExpress:AT1G71840 |
| EnsemblPlantsGene:AT1G71840 | RefSeq:AT1G71840 | TAIR:AT1G71840 | RefSeq:AT1G71840-TAIR-G | EnsemblPlants:AT1G71840.1 | TAIR:AT1G71840.1 |
| EMBL:AY080732 | InterPro:Apc4_WD40_dom | Unigene:At.44000 | EMBL:BT001964 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0008150 | GO:GO:0030687 | GO:GO:0042273 | GO:GO:0051082 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | RefSeq:NP_177329.2 | ProteinID:OAP17611.1 | PFAM:PF00400 | PFAM:PF12894 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19857 | PANTHER:PTHR19857:SF8 | UniProt:Q8RXQ4 |
| InterPro:Quinoprotein_ADH-like_supfam | SMART:SM00320 | SUPFAM:SSF50998 | UniParc:UPI000000BD6D | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | SEG:seg | : | : | : |
Description
Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
Coordinates
chr1:+:27022138..27024551
Molecular Weight (calculated)
43793.4 Da
IEP (calculated)
4.107
GRAVY (calculated)
-0.231
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.