Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G161300.1 | Wheat | cytosol | 63.54 | 69.5 |
| HORVU1Hr1G061600.22 | Barley | cytosol | 63.89 | 68.84 |
| TraesCS1A01G164300.1 | Wheat | cytosol | 63.77 | 68.55 |
| TraesCS1B01G181100.1 | Wheat | cytosol | 63.43 | 67.35 |
| OQU91573 | Sorghum | plastid | 66.74 | 66.82 |
| TraesCS1D01G151100.1 | Wheat | cytosol | 45.71 | 62.99 |
| Zm00001d032598_P023 | Maize | cytosol, plasma membrane, plastid | 63.2 | 59.91 |
| Os04t0677700-00 | Rice | cytosol | 39.77 | 39.1 |
| Os01t0780400-02 | Rice | cytosol | 36.91 | 38.54 |
| Zm00001d033713_P002 | Maize | cytosol, extracellular, plastid | 21.71 | 37.92 |
| Os01t0531300-00 | Rice | endoplasmic reticulum, extracellular | 9.37 | 36.94 |
| Os03t0725400-02 | Rice | cytosol | 8.46 | 22.84 |
| Os07t0572000-01 | Rice | plastid | 8.8 | 22.78 |
| Os06t0653800-01 | Rice | nucleus | 7.89 | 20.12 |
| Os03t0685600-01 | Rice | cytosol | 7.89 | 17.51 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 5.94 | 17.28 |
| Os10t0104500-01 | Rice | cytosol | 9.14 | 16.67 |
| Os11t0594200-01 | Rice | cytosol | 8.91 | 16.25 |
| Os03t0339100-01 | Rice | nucleus | 8.46 | 15.68 |
| Os03t0746600-01 | Rice | nucleus | 7.54 | 12.92 |
| Os01t0951000-02 | Rice | cytosol, mitochondrion, nucleus | 1.6 | 4.95 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | EntrezGene:4348995 | ProteinID:ABB47820.1 | ProteinID:BAF26860.1 | ProteinID:BAT11462.1 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 |
| GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 | HAMAP:MF_03022 | EnsemblPlantsGene:Os10g0494800 | EnsemblPlants:Os10t0494800-01 |
| PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19845 | PANTHER:PTHR19845:SF14 | UniProt:Q337H9 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI00005E1F2D |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015613576.1 |
| SEG:seg | : | : | : | : | : |
Description
katanin P80a, Katanin regulatory subunit P80aSimilar to Katanin p80 WD40-containing subunit B1 (Katanin p80 subunit B1) (p80 katanin). (Os10t0494800-01)
Coordinates
chr10:-:18798798..18805869
Molecular Weight (calculated)
96482.3 Da
IEP (calculated)
7.720
GRAVY (calculated)
-0.320
Length
875 amino acids
Sequence
(BLAST)
(BLAST)
001: MATKRAYKLQ EFVAHASDVN CVKFGRKTSR ILITGGEDQK VNLWAIGKPS SILSLSGLTS PVESVSFDSS EAMIGAGASS GTIKIWDVDE AKVVRTFTGH
101: RSSCASLDFH PFGEFFASGS SDTNMKIWDM RKKGCIHTYK GHTRRIDVLR FTPDGRWIVS GGSDNSVKIW DLTAGKLLHD FRNHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENSRE YFVPASVVRS MTFNKDGKSL FCGLHESLKV LSWEPIICHD VVDVGWSTLG DLIVHEGKLL GCSYNQSCAG
301: IWVVDLMKIE PYAVSIAEAH LNESVNRSIQ ADNSISSVLG RLSVSRSPAK EASSDTLLKL SMSASKEVPV PASSAVTKKL PKEPITSNIR LTRSDSLPVV
401: SPRVRLNPKF SDDQKRQTDY AVPITTPRIR SKVDLSIGAR AFHRNSVPSV APTNRSRSKI SAYSSEGSSF IPVVVPRHIP KVDSGPNLSK VLTTDLTIVE
501: PQDIERGGLA VDCGEDDKLV CVIDSRSSNM GVQNGRRRKA GDIITHKETP ETALTVNMDR DFRRKAPETE SMQQDIFHSE PISSKCKYIK ETSGAGDINL
601: SGSAITESVK SNEGGDWYNA SSFVKPNLTV GRNPETSYIN RRTMFGLRHS TDSSEKHAVE HGPSNLSASY ERNQYAPTLH NLRRRSSVAR EQSASAGDED
701: DIADLMENHQ EFIHAVKSRL TKLEVVYRCW HNNDVKGSID ATRRIQDLDV TADIISVLME NDNSITLDIC TCVLPLASSV LEKSSYDRHL KVALEMILKL
801: VKSFGSTISS AVSSTPPVGV DIEAEQRLNR CNLCFLELIK VHSVLFALTR RQGEVGRSAQ ELSLFLQDIF QLTSR
101: RSSCASLDFH PFGEFFASGS SDTNMKIWDM RKKGCIHTYK GHTRRIDVLR FTPDGRWIVS GGSDNSVKIW DLTAGKLLHD FRNHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENSRE YFVPASVVRS MTFNKDGKSL FCGLHESLKV LSWEPIICHD VVDVGWSTLG DLIVHEGKLL GCSYNQSCAG
301: IWVVDLMKIE PYAVSIAEAH LNESVNRSIQ ADNSISSVLG RLSVSRSPAK EASSDTLLKL SMSASKEVPV PASSAVTKKL PKEPITSNIR LTRSDSLPVV
401: SPRVRLNPKF SDDQKRQTDY AVPITTPRIR SKVDLSIGAR AFHRNSVPSV APTNRSRSKI SAYSSEGSSF IPVVVPRHIP KVDSGPNLSK VLTTDLTIVE
501: PQDIERGGLA VDCGEDDKLV CVIDSRSSNM GVQNGRRRKA GDIITHKETP ETALTVNMDR DFRRKAPETE SMQQDIFHSE PISSKCKYIK ETSGAGDINL
601: SGSAITESVK SNEGGDWYNA SSFVKPNLTV GRNPETSYIN RRTMFGLRHS TDSSEKHAVE HGPSNLSASY ERNQYAPTLH NLRRRSSVAR EQSASAGDED
701: DIADLMENHQ EFIHAVKSRL TKLEVVYRCW HNNDVKGSID ATRRIQDLDV TADIISVLME NDNSITLDIC TCVLPLASSV LEKSSYDRHL KVALEMILKL
801: VKSFGSTISS AVSSTPPVGV DIEAEQRLNR CNLCFLELIK VHSVLFALTR RQGEVGRSAQ ELSLFLQDIF QLTSR
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARGGLV AKSVLELNLA FQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.