Factsheet for HORVU1Hr1G061600.22

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G161300.1	Wheat	cytosol	88.05	89.38
TraesCS1A01G164300.1	Wheat	cytosol	89.16	88.94
TraesCS1B01G181100.1	Wheat	cytosol	90.15	88.83
TraesCS1D01G151100.1	Wheat	cytosol	68.23	87.24
Os10t0494800-01	Rice	cytosol	68.84	63.89
OQU91573	Sorghum	plastid	64.04	59.5
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	60.96	53.63
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	23.15	37.52
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	38.67	32.54
HORVU2Hr1G041020.2	Barley	cytosol, plastid	9.11	20.56
HORVU7Hr1G111780.2	Barley	cytosol, plastid	8.62	20.23
HORVU4Hr1G009500.1	Barley	cytosol, plastid	8.62	20.17
HORVU3Hr1G013230.4	Barley	cytosol	9.11	18.5
HORVU6Hr1G063000.1	Barley	cytosol	6.28	16.04
HORVU1Hr1G095080.1	Barley	cytosol, plastid	9.48	15.31
HORVU2Hr1G022250.4	Barley	mitochondrion	8.74	14.31
HORVU3Hr1G035450.7	Barley	mitochondrion	8.99	14.26
HORVU0Hr1G027010.1	Barley	plastid	6.28	14.21
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	8.37	13.2
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	9.85	10.62
HORVU5Hr1G075920.16	Barley	nucleus	7.39	8.16

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	UniProt:A0A287FVT0	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043
GO:GO:0051013	EnsemblPlantsGene:HORVU1Hr1G061600	EnsemblPlants:HORVU1Hr1G061600.22	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF14	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000B468D52	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:A0A287FVT0]

Coordinates

chrchr1H:+:445556899..445563123

Molecular Weight (calculated)

88777.2 Da

IEP (calculated)

7.313

GRAVY (calculated)

-0.242

Length

812 amino acids

Sequence
(BLAST)

001: MATKRAYKLQ EFVAHASDVT CAKFGKRTSR TLITGGEDQK VNLWAVGKPT AVLSLSGLTS PVESLSFDSS EVMIGAGAAS GTIKIWDIEE AKVVRTFTGH
101: RSNCASLDSH PFGDFFASGS SDTNMKIWDM RKKRCIHTYQ GHTGRIDVLR FTPDGRWIVS GGADSSVKIW DLTAGKLLHD FRLHEGPINC LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSSGPENCRE YYVPGSVVRS MTFNSDGKAL FCGLHESLKV LSWEPIICHD AVDVGWSTLA DLNVQEGKLL GCSYNQSCVG
301: IWVVDLMKID PYAVRNAEAF LNGSGNGPLQ ADNSISSMLE RLSISRSPGV QANETPSNTL LKRPMSASKV TSVPASSAVR KRLSKAPGIN NFRLTRAESA
401: PLLSPRIRLK PNSTDDQNTH ITNVCFKVDL STSARMIAGS SQASAAPTYI PRSNIYAGSS EGSSLVPGVA PRHVSNVDVG SNLSEAAPAD LPAMRPENLI
501: KGHLAVDHDN DVHHCVFHSK PITSKTPQRK FIRETSSDGD INCFGPLCAE SVQSNEVDDW YDVCGFEETK SEVGRNPQFV NVNRTVVFGS SQLVESSESS
601: IVQNRGKGHL CANYERSEYA PTLDGLRKQS SFAGEHTASA NDNNLIANLM QSHQEFIHGV KSRLTKLELV YRCWQNNDIK GSVSAMRRMS DHAVTADIIN
701: VLIMEKSTKY ITLDICTSVL PLAANLLESG YDRHLNFALA TILKLVKSFS ASIFSSLSSA PPVGVDLEAE QRLERCSLCF QELEKINANL ISLTRREGKV
801: GRSARELSLF LQ

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.