Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G044300.1 | Wheat | cytosol | 70.0 | 26.47 |
| Zm00001d013996_P003 | Maize | mitochondrion | 75.56 | 21.25 |
| Zm00001d039404_P001 | Maize | plasma membrane | 74.44 | 20.74 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 72.22 | 19.82 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 71.11 | 19.51 |
| Os06t0116300-01 | Rice | plasma membrane | 71.11 | 19.39 |
| GSMUA_Achr11P... | Banana | mitochondrion | 70.0 | 19.38 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 66.67 | 18.87 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 66.67 | 18.35 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 57.78 | 18.06 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 72.22 | 17.96 |
| GSMUA_Achr10P... | Banana | mitochondrion | 65.56 | 17.88 |
| KRG92945 | Soybean | mitochondrion | 64.44 | 17.79 |
| KRH33850 | Soybean | endoplasmic reticulum | 64.44 | 17.79 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 62.22 | 17.28 |
| AT5G26980.1 | Thale cress | mitochondrion | 61.11 | 17.08 |
| Bra040527.1-P | Field mustard | mitochondrion | 60.0 | 16.98 |
| CDY18808 | Canola | mitochondrion | 60.0 | 16.98 |
| CDY22037 | Canola | mitochondrion | 60.0 | 16.77 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 60.0 | 16.72 |
| AT3G05710.2 | Thale cress | mitochondrion | 61.11 | 16.62 |
| CDY52786 | Canola | mitochondrion | 58.89 | 16.46 |
| CDY05193 | Canola | mitochondrion | 57.78 | 16.4 |
| KRG96492 | Soybean | plastid | 58.89 | 16.36 |
| KRH68233 | Soybean | plastid | 57.78 | 16.25 |
| CDY27747 | Canola | mitochondrion | 56.67 | 16.09 |
| Bra039417.1-P | Field mustard | mitochondrion | 56.67 | 16.09 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 56.67 | 15.94 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 62.22 | 15.26 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 53.33 | 15.05 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 26.67 | 9.23 |
| CDX97432 | Canola | extracellular, vacuole | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d045530_P001 | EnsemblPlants:Zm00001d045530_T001 | EnsemblPlantsGene:Zm00001d045530 | Gene3D:1.20.58.70 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016192 | InterPro:SNARE | ProteinID:AQL02486.1 | SUPFAM:SSF47661 |
| UniParc:UPI0008432F50 | UniProt:A0A1D6NWK0 | MapMan:22.7.1.4 | : | : | : |
Description
Syntaxin-41
Coordinates
chr9:+:25602707..25603081
Molecular Weight (calculated)
10462.4 Da
IEP (calculated)
8.764
GRAVY (calculated)
-0.871
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MPSFGDCRGN QRVIEVLTHE ITNLLKRSEK RPQKLSMEDP SEDSNFRKNV QCSLAMDLQN LSLGFWKKQS SYSKELRQQK EVPFLLSSDN
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
Arabidopsis Description
SYP42Syntaxin-42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWH4]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.