Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 4
- plasma membrane 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22037 | Canola | mitochondrion | 88.46 | 7.14 |
| EER87742 | Sorghum | mitochondrion | 61.54 | 6.72 |
| CDY52786 | Canola | mitochondrion | 80.77 | 6.52 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 80.77 | 6.5 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 53.85 | 5.88 |
| Os06t0116300-01 | Rice | plasma membrane | 73.08 | 5.76 |
| CDY05193 | Canola | mitochondrion | 69.23 | 5.68 |
| CDY27747 | Canola | mitochondrion | 69.23 | 5.68 |
| Zm00001d013996_P003 | Maize | mitochondrion | 69.23 | 5.62 |
| Zm00001d039404_P001 | Maize | plasma membrane | 69.23 | 5.57 |
| GSMUA_Achr11P... | Banana | mitochondrion | 69.23 | 5.54 |
| OQU86127 | Sorghum | mitochondrion | 69.23 | 5.52 |
| GSMUA_Achr10P... | Banana | mitochondrion | 69.23 | 5.45 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 65.38 | 5.35 |
| CDY18808 | Canola | mitochondrion | 65.38 | 5.35 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 65.38 | 5.33 |
| KRG96492 | Soybean | plastid | 65.38 | 5.25 |
| KRH68233 | Soybean | plastid | 61.54 | 5.0 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 61.54 | 4.88 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 61.54 | 4.78 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 53.85 | 4.27 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 57.69 | 4.14 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 7.69 | 0.62 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 3.85 | 0.38 |
| Zm00001d045530_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX97432 | EnsemblPlantsGene:GSBRNA2T00104585001 | GO:A0A078E8R5 | ProteinID:CDX97432 | ProteinID:CDX97432.1 | TMHMM:TMhelix |
| UniParc:UPI0004EECB8D | MapMan:35.2 | : | : | : | : |
Description
BnaC08g12970D
Coordinates
chrLK031899:-:612699..612779
Molecular Weight (calculated)
3039.2 Da
IEP (calculated)
9.406
GRAVY (calculated)
2.388
Length
26 amino acids
Sequence
(BLAST)
(BLAST)
1: MVKYATILLI LCFIMIVLLI LKNVLF
001: MATRNRTTVY RKHRDACKSA RAPLSLSASD SFGGPVIEMV SGSFSRSNHS SYAPLNSYDP GPSSSDAFTI GMPPAWVDDS EEITFNIQKV RDKMNELAKA
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
101: HSKALMPTFG DNKGIHREVE MLTHEITDLL RKSEKRLQML STRGPSEESN LRKNVQRSLA TDLQNLSMEL RRKQSTYLKR LQQQKEGQDE VDLEFNVNGK
201: MSRLDEEDEL GGMGFDEHQT IKLKEGQHVS AEREREIQQV LGSVNDLAQI MKDLSALVID QGTIVDRIDY NVQNVSTSVE EGYKQLQKAE RTQREGAMVK
301: CATILLVLCL IMIVLLILKN ILF
Arabidopsis Description
SYP42Syntaxin-42 [Source:UniProtKB/Swiss-Prot;Acc:Q9SWH4]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.