CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX73599
CDX74445
CDX74451
CDX78128
CDX95233
CDX97432
CDY13344
CDY22037
CDY30250
CDY37005
CDY52786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	CDX67539	AT3G52850.1	10888666
AT1G77140.1	CDX73599	AT3G52850.1	10888666
AT1G77140.1	CDX78128	AT3G52850.1	10888666
AT1G77140.1	CDY13344	AT3G52850.1	10888666
AT1G77140.1	CDX97432	AT4G02195.1	10888666
AT1G77140.1	CDY22037	AT4G02195.1	10888666
AT1G77140.1	CDY52786	AT4G02195.1	10888666
AT1G77140.1	CDX74445	AT5G39510.1	10888666
AT1G77140.1	CDX74451	AT5G39510.1	10888666
AT1G77140.1	CDX95233	AT5G39510.1	10888666
AT1G77140.1	CDY30250	AT5G39510.1	10888666
AT1G77140.1	CDY37005	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79223	Canola	cytosol, plastid	13.69	74.24
Bra008294.1-P	Field mustard	cytosol	99.72	62.74
CDY38360	Canola	cytosol	99.72	62.74
CDX79215	Canola	cytosol	70.67	61.11
AT1G77140.1	Thale cress	cytosol	94.97	59.75
VIT_18s0001g15600.t01	Wine grape	cytosol	87.71	55.28
Solyc04g064820.2.1	Tomato	cytosol, nucleus	84.92	53.52
KRH64544	Soybean	endoplasmic reticulum	84.64	53.35
KRH53395	Soybean	cytosol	83.8	52.82
GSMUA_Achr10P...	Banana	cytosol	80.73	51.15
CDY13575	Canola	cytosol	81.56	50.96
CDY71507	Canola	cytosol, golgi	40.78	49.16
Os02t0437800-02	Rice	cytosol, plasma membrane	74.58	47.09
EES13788	Sorghum	cytosol	74.02	46.74
TraesCS2D01G259600.1	Wheat	cytosol	73.46	46.38
TraesCS2B01G277800.2	Wheat	cytosol	73.46	46.38
TraesCS2A01G264300.1	Wheat	cytosol	73.46	46.38
Zm00001d049522_P001	Maize	cytosol, plasma membrane	74.86	42.34
HORVU2Hr1G062800.7	Barley	cytosol, plastid	73.18	41.72
CDX79222	Canola	cytosol, mitochondrion	26.54	35.06
CDX79189	Canola	cytosol	22.63	29.45
CDY26558	Canola	cytosol	8.1	18.24
CDY48989	Canola	cytosol	14.25	16.56
CDY52165	Canola	cytosol	15.92	15.83
CDX94488	Canola	cytosol	24.02	12.93
CDX86721	Canola	cytosol	23.46	12.75
CDX90817	Canola	cytosol	23.74	12.71
CDY63506	Canola	cytosol	21.23	12.62
CDY29213	Canola	cytosol	21.23	12.62
CDY68111	Canola	cytosol	23.46	12.56
CDY39875	Canola	cytosol	11.45	12.54
CDX98070	Canola	cytosol	23.18	12.48
CDY26559	Canola	cytosol	23.18	12.46
CDY15993	Canola	cytosol	23.18	12.44
CDY30074	Canola	cytosol	23.18	12.43
CDY38041	Canola	nucleus	20.39	10.81
CDY49318	Canola	plastid	0.56	1.64
CDY52164	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	GO:A0A078JXT2
UniProt:A0A078JXT2	EnsemblPlants:CDY70457	ProteinID:CDY70457	ProteinID:CDY70457.1	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00003464001	InterPro:IPR027482	PFAM:PF00995
PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf
UniParc:UPI0004EE3047	SEG:seg	:	:	:	:

Description

BnaCnng68440DBnaCnng68440D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JXT2]

Coordinates

chrLK042174:-:3..1909

Molecular Weight (calculated)

40884.8 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.298

Length

358 amino acids

Sequence
(BLAST)

001: MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISAS NESMSHLKAV YFVRPTSENV QKLRHQLANP RFGEYHLFFS NLLKDTQIHI LADSDEQEVV
101: QQVQEFYADF VAGDPYHFTL NMAANHLYML PAVVDPSGLQ RYSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAQETA KLMYQQESGL FDFRRTESSP
201: LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLRA IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM VDDFQQVAKS NQNIQTVEDM
301: ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMLVS QTEQDLACNG GQGAAYEV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.