CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70457	Canola	cytosol	74.24	13.69
CDX79215	Canola	cytosol	77.27	12.32
CDY38360	Canola	cytosol	80.3	9.31
GSMUA_Achr10P...	Banana	cytosol	63.64	7.43
TraesCS2D01G259600.1	Wheat	cytosol	62.12	7.23
TraesCS2B01G277800.2	Wheat	cytosol	62.12	7.23
TraesCS2A01G264300.1	Wheat	cytosol	62.12	7.23
Os02t0437800-02	Rice	cytosol, plasma membrane	60.61	7.05
EES13788	Sorghum	cytosol	60.61	7.05
CDY71507	Canola	cytosol, golgi	30.3	6.73
HORVU2Hr1G062800.7	Barley	cytosol, plastid	62.12	6.53
Zm00001d049522_P001	Maize	cytosol, plasma membrane	62.12	6.48
Solyc10g074520.1.1	Tomato	cytosol	19.7	4.3
CDY48989	Canola	cytosol	19.7	4.22
CDY52165	Canola	cytosol	21.21	3.89
CDY13575	Canola	cytosol	24.24	2.79
CDY29213	Canola	cytosol	24.24	2.66
CDY63506	Canola	cytosol	24.24	2.66
CDX90817	Canola	cytosol	22.73	2.24
CDX86721	Canola	cytosol	21.21	2.12
CDX94488	Canola	cytosol	21.21	2.11
CDY68111	Canola	cytosol	21.21	2.09
CDX98070	Canola	cytosol	19.7	1.95
CDY15993	Canola	cytosol	19.7	1.95
CDY30074	Canola	cytosol	19.7	1.95
CDY38041	Canola	nucleus	19.7	1.93
CDX79189	Canola	cytosol	7.58	1.82
CDY26559	Canola	cytosol	18.18	1.8
CDY39875	Canola	cytosol	4.55	0.92
CDX79222	Canola	cytosol, mitochondrion	3.03	0.74
CDY26558	Canola	cytosol	0.0	0.0
Solyc10g074510.1.1	Tomato	cytosol	0.0	0.0
CDY52164	Canola	cytosol	0.0	0.0
CDY49318	Canola	plastid	0.0	0.0
VIT_03s0038g00020.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX79223	EnsemblPlantsGene:GSBRNA2T00131823001	Gene3D:3.40.50.1910	GO:A0A078CVK7	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	InterPro:Sec-1-like_dom2	InterPro:Sec1-like_sf
ProteinID:CDX79223	ProteinID:CDX79223.1	SUPFAM:SSF56815	UniParc:UPI0004EE7CB7	MapMan:35.1	:

Description

BnaC06g20800D

Coordinates

chrLK031817:-:435325..436530

Molecular Weight (calculated)

7405.0 Da

IEP (calculated)

10.199

GRAVY (calculated)

-0.332

Length

66 amino acids

Sequence
(BLAST)

1: MPSTHLYMLP AVVDPSGLQR YSDRVVDGIA AVFLALKRRP VIRYQRTSDT AKKDCTRNSC SYGSLK

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.