Factsheet for TraesCS2A01G264300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G435000.1
TraesCS7A01G049200.1
TraesCS7D01G044300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	TraesCS4A01G435000.1	AT4G02195.1	10888666
AT1G77140.1	TraesCS7A01G049200.1	AT4G02195.1	10888666
AT1G77140.1	TraesCS7D01G044300.1	AT4G02195.1	10888666
AT1G77140.1	TraesCS4A01G435000.1	AT5G26980.1	10888666
AT1G77140.1	TraesCS7A01G049200.1	AT5G26980.1	10888666
AT1G77140.1	TraesCS7D01G044300.1	AT5G26980.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G277800.2	Wheat	cytosol	100.0	100.0
TraesCS2D01G259600.1	Wheat	cytosol	99.82	99.82
Os02t0437800-02	Rice	cytosol, plasma membrane	92.24	92.24
EES13788	Sorghum	cytosol	92.24	92.24
HORVU2Hr1G062800.7	Barley	cytosol, plastid	99.65	89.97
Zm00001d049522_P001	Maize	cytosol, plasma membrane	92.24	82.62
GSMUA_Achr10P...	Banana	cytosol	80.42	80.71
VIT_18s0001g15600.t01	Wine grape	cytosol	79.37	79.23
CDX79189	Canola	cytosol	38.1	78.55
KRH64544	Soybean	endoplasmic reticulum	78.48	78.35
KRH53395	Soybean	cytosol	78.48	78.35
Bra008294.1-P	Field mustard	cytosol	76.72	76.45
AT1G77140.1	Thale cress	cytosol	76.72	76.45
Solyc04g064820.2.1	Tomato	cytosol, nucleus	76.54	76.41
CDY38360	Canola	cytosol	76.54	76.27
CDY70457	Canola	cytosol	46.38	73.46
CDX79215	Canola	cytosol	50.97	69.81
CDY13575	Canola	cytosol	67.55	66.84
VIT_03s0038g00020.t01	Wine grape	cytosol	8.11	63.01
CDX79223	Canola	cytosol, plastid	7.23	62.12
CDX79222	Canola	cytosol, mitochondrion	21.34	44.65
CDY71507	Canola	cytosol, golgi	20.81	39.73
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	20.11	18.33
TraesCS3A01G538700.1	Wheat	cytosol	19.93	17.2
TraesCS2A01G061000.1	Wheat	nucleus	20.11	17.07
TraesCS6A01G193500.1	Wheat	cytosol	19.22	16.47
Solyc10g074510.1.1	Tomato	cytosol	1.76	16.39
Solyc10g074520.1.1	Tomato	cytosol	8.29	15.56

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0006904	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987
GO:GO:0016020	GO:GO:0016192	InterPro:IPR027482	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679
PANTHER:PTHR11679:SF3	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	EnsemblPlantsGene:TraesCS2A01G264300
EnsemblPlants:TraesCS2A01G264300.1	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:419193230..419209149

Molecular Weight (calculated)

64585.8 Da

IEP (calculated)

6.962

GRAVY (calculated)

-0.217

Length

567 amino acids

Sequence
(BLAST)

001: MVLIPLIRDY IDRMLQDISG MKVLILDPQT VGMVSVVYSQ SDLLRKEVFL VETVDDASSS RASMAHLKAV YFLRPSSDNV QKLRRHLSAP RFAECHLFFS
101: NILKIPQIQV LADSDEQEVV QQIQEFYADF CAIDPFHFTL NIHNNHIYML PTVVDPPGMQ SFCDRAVDGI ASVFLALKRR PVIRYQRTSD VAKRIAQETT
201: RLMYEQESGL FDFRRTENSS LLLVIDRRDD PVTPLLNQWT YQAMVHELIG IENNKVDLKE FANVPKDQQE VVLSAVQDDF FRVNMFENFG DLGMNVKRMV
301: DDFQHLSKSS QNFQSIDDMA KFVSNYPEYR KTHGNVTKHV ALVSEMSRMV EERKLMQVSQ TEQELACASG QAAAFEAVTS LLNNESVSDI DRLRLVMLYA
401: LRYEKESPVQ LMQLFNKLAS RSAKYKSGLV QFLLKQAGVD KRTGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLIFQT MEGIVKGRLR DADYPLVGNH
501: FQQGRPQDVV IFIVGGTTYE EARSVALYNA ANPGVRFFLG GSVVLNSKRF LENLGEAQRI SKSSTLL

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.