Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G060000.1 | Wheat | nucleus | 97.6 | 97.75 |
| TraesCS2B01G074400.1 | Wheat | nucleus | 97.01 | 97.3 |
| HORVU2Hr1G011610.5 | Barley | plastid | 90.27 | 84.22 |
| KXG25933 | Sorghum | cytosol, plastid | 82.93 | 83.06 |
| Zm00001d004159_P003 | Maize | cytosol, plastid | 78.59 | 78.12 |
| TraesCS6A01G193500.1 | Wheat | cytosol | 75.75 | 76.44 |
| GSMUA_Achr7P16530_001 | Banana | nucleus | 71.86 | 72.18 |
| GSMUA_Achr7P16520_001 | Banana | cytosol | 72.16 | 72.16 |
| Os04t0252400-01 | Rice | plasma membrane | 13.77 | 70.23 |
| TraesCS3A01G538700.1 | Wheat | cytosol | 57.19 | 58.14 |
| TraesCS2A01G264300.1 | Wheat | cytosol | 17.07 | 20.11 |
| TraesCS5A01G038500.1 | Wheat | cytosol, mitochondrion | 17.66 | 18.97 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G061000.1 | EnsemblPlantsGene:TraesCS2A01G061000 | Gene3D:1.25.40.60 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | Gene3D:3.90.830.10 |
| GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:IPR027482 |
| InterPro:Sec-1-like_dom2 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF42 | PFAM:PF00995 |
| PIRSF:PIRSF005715 | SEG:seg | SUPFAM:SSF56815 | MapMan:13.4.2.4 | : | : |
Description
No Description!
Coordinates
chr2A:+:27414477..27423745
Molecular Weight (calculated)
75972.4 Da
IEP (calculated)
8.786
GRAVY (calculated)
-0.468
Length
668 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTDSDSSSR GAGGTFREIT RDRLLNEMLR STRQNKGSPW KVLIMDKLTV KIMSSSCKMG DITEQGVSLV EDLYKRRQPL PSMEAIYFMQ PTKQNIDIFM
101: SNMSGKRPLY KKAYIFFSSP IQKEWVAHIR KDSSVLARVG ALSEMNLEYF AIDSQGFVTD HDKALEELFT ENAEGSMNYN SCINTIATRI ATVFASMKEF
201: PRVHYRVART IDASTLTTLR DLVPTKLAAS VWNCLARYKS IIPEFPQTET CELLIVDRSI DQIAPVIHEW TYDAMCHDLL SMDGNKYVQE VPNKSGSGTE
301: KKEVLLEDHD PIWFELRDVH VADANLRLHE KMRDFISKNK AAQLHQARTN GELSTKELQK MVQALPQYTD QIDKLSLHVE IAEKLFDIIK EQHLKDVGQL
401: EQDLVFGDAG SKELIDFFRT HQDISRENKL RLLMIYAAIN PEKIQSEKGA KLMQIFSQLA GLSADDMIAV NNMRCLCAHE TKKSSKGGFP VKFEMRKKKR
501: GIRKERIGEE STWTLSRFYP ILEDLIEKLS KGELPKDEYH CMSDPSSSFR GISSSMSART SPAHQPAQSM RSRRTAGTWA RPRNSDDGYS SDSVLKHASS
601: DMRKLGRRLF IFVVGGATRS ELRAVHKLSS KLKREIILGS SSLDDPPKFI TKLKMMSNEE LSLDDLQI
101: SNMSGKRPLY KKAYIFFSSP IQKEWVAHIR KDSSVLARVG ALSEMNLEYF AIDSQGFVTD HDKALEELFT ENAEGSMNYN SCINTIATRI ATVFASMKEF
201: PRVHYRVART IDASTLTTLR DLVPTKLAAS VWNCLARYKS IIPEFPQTET CELLIVDRSI DQIAPVIHEW TYDAMCHDLL SMDGNKYVQE VPNKSGSGTE
301: KKEVLLEDHD PIWFELRDVH VADANLRLHE KMRDFISKNK AAQLHQARTN GELSTKELQK MVQALPQYTD QIDKLSLHVE IAEKLFDIIK EQHLKDVGQL
401: EQDLVFGDAG SKELIDFFRT HQDISRENKL RLLMIYAAIN PEKIQSEKGA KLMQIFSQLA GLSADDMIAV NNMRCLCAHE TKKSSKGGFP VKFEMRKKKR
501: GIRKERIGEE STWTLSRFYP ILEDLIEKLS KGELPKDEYH CMSDPSSSFR GISSSMSART SPAHQPAQSM RSRRTAGTWA RPRNSDDGYS SDSVLKHASS
601: DMRKLGRRLF IFVVGGATRS ELRAVHKLSS KLKREIILGS SSLDDPPKFI TKLKMMSNEE LSLDDLQI
001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.