Factsheet for VIT_18s0001g15600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 3
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_07s0005g01000.t01
VIT_08s0058g01360.t01
VIT_14s0060g01540.t01
VIT_14s0108g01200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	VIT_08s0058g01360.t01	AT3G52850.1	10888666
AT1G77140.1	VIT_07s0005g01000.t01	AT4G02195.1	10888666
AT1G77140.1	VIT_14s0060g01540.t01	AT5G26980.1	10888666
AT1G77140.1	VIT_14s0108g01200.t01	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64544	Soybean	endoplasmic reticulum	89.26	89.26
KRH53395	Soybean	cytosol	88.56	88.56
CDY70457	Canola	cytosol	55.28	87.71
Solyc04g064820.2.1	Tomato	cytosol, nucleus	87.5	87.5
GSMUA_Achr10P...	Banana	cytosol	86.62	87.08
Bra008294.1-P	Field mustard	cytosol	86.44	86.29
CDY38360	Canola	cytosol	86.44	86.29
AT1G77140.1	Thale cress	cytosol	86.09	85.94
CDX79189	Canola	cytosol	41.37	85.45
VIT_03s0038g00020.t01	Wine grape	cytosol	10.74	83.56
TraesCS2D01G259600.1	Wheat	cytosol	79.23	79.37
TraesCS2A01G264300.1	Wheat	cytosol	79.23	79.37
TraesCS2B01G277800.2	Wheat	cytosol	79.23	79.37
EES13788	Sorghum	cytosol	78.87	79.01
CDX79215	Canola	cytosol	57.22	78.5
Os02t0437800-02	Rice	cytosol, plasma membrane	78.35	78.48
CDY13575	Canola	cytosol	76.06	75.39
HORVU2Hr1G062800.7	Barley	cytosol, plastid	79.05	71.5
Zm00001d049522_P001	Maize	cytosol, plasma membrane	79.4	71.25
CDX79222	Canola	cytosol, mitochondrion	24.47	51.29
VIT_13s0019g05000.t01	Wine grape	cytosol	20.77	17.74
VIT_03s0038g03110.t01	Wine grape	cytosol	18.49	17.68
VIT_15s0048g00970.t01	Wine grape	cytosol	18.66	17.15
VIT_15s0045g00060.t01	Wine grape	cytosol	13.73	17.11

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100243832	wikigene:100243832	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060
Gene3D:3.90.830.10	ProteinID:CBI19972	ProteinID:CBI19972.3	UniProt:E0CQP3	EMBL:FN595227	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0006904	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987
GO:GO:0016020	GO:GO:0016192	InterPro:IPR027482	EntrezGene:LOC100243832	wikigene:LOC100243832	PFAM:PF00995
PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	TIGR:TC64049	UniParc:UPI00015C7E46	ArrayExpress:VIT_18s0001g15600	EnsemblPlantsGene:VIT_18s0001g15600	EnsemblPlants:VIT_18s0001g15600.t01
unigene:Vvi.10347	RefSeq:XP_002263592	RefSeq:XP_002263592.1	RefSeq:XP_010664888.1	RefSeq:XP_010664889.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:13720692..13730593

Molecular Weight (calculated)

65049.5 Da

IEP (calculated)

6.808

GRAVY (calculated)

-0.240

Length

568 amino acids

Sequence
(BLAST)

001: MVLISAVRDY MSRMLQDISG MKVLILDSQT VSIVSVVYSQ SELLQKEVFL VELVDSISMS KESMSHLKAV YFLRPTSENI QHLRRQFASP RFGEYHLFFS
101: NILKDTQIHI LADSDEQEVV QQVQEFYADF VAIDPFHFTL NMPSNHIYML PAVVDPSGLQ HYCDRVVDGI GAIFLALKRR PVIRYQRTSD IAKRIAQETA
201: KLMYQQESGL FDFRRTEVSP LLLVVDRRDD PVTPLLNQWT YQAMVHELIG IQDNKVDLTN IGKFPKDQQE VVLSSEQDAF FKANMYENFG DIGMNIKRMV
301: DEFQQISKSN QNIQTVEDMA KFVDNYPEYK KMHGNVSKHV TMVTEMSKIV EERKLMLVSQ TEQDLACNGG QVAAFEAVTN LLNDERVSDV DRLRLVMLYA
401: LRYEKESPVQ LMQLFNKLAS RSAKYKPGLV QFLLKQAGVD KRIGDLYGNR DLLNIARNMA RGLKGVENVY TQHQPLLFQT MESINKGRLR DVDYPFIGNH
501: FQQGRPQDVV IFIVGGTTYE ESRSIALQNA SNSGIRFILG GSVVLNSKRF LKDLEEAQRI ARTSTNVV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.