Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_15s0045g00060.t01 | Wine grape | cytosol | 71.84 | 97.37 |
| PGSC0003DMT400020076 | Potato | cytosol | 61.0 | 72.22 |
| Solyc01g091300.2.1 | Tomato | nucleus | 60.52 | 71.24 |
| VIT_13s0019g05000.t01 | Wine grape | cytosol | 76.38 | 70.98 |
| KRH76261 | Soybean | nucleus | 75.57 | 69.7 |
| KRH65274 | Soybean | cytosol | 75.24 | 69.51 |
| GSMUA_Achr9P24460_001 | Banana | cytosol | 73.14 | 68.17 |
| Bra032660.1-P | Field mustard | cytosol | 63.43 | 65.77 |
| CDY38041 | Canola | nucleus | 71.68 | 65.63 |
| AT1G02010.4 | Thale cress | cytosol, nucleus, peroxisome | 73.62 | 64.72 |
| KXG19223 | Sorghum | cytosol | 67.96 | 64.22 |
| Os06t0135900-01 | Rice | plasma membrane | 53.24 | 63.03 |
| TraesCS3A01G538700.1 | Wheat | cytosol | 65.05 | 61.19 |
| TraesCS3B01G607200.1 | Wheat | cytosol | 65.05 | 61.19 |
| TraesCS3D01G542100.1 | Wheat | cytosol | 65.05 | 61.19 |
| Zm00001d045434_P004 | Maize | cytosol | 67.8 | 60.81 |
| HORVU3Hr1G117280.1 | Barley | cytosol | 65.21 | 59.44 |
| Solyc01g091290.2.1 | Tomato | cytosol, unclear | 16.34 | 54.3 |
| VIT_18s0001g15600.t01 | Wine grape | cytosol | 17.15 | 18.66 |
| VIT_03s0038g03110.t01 | Wine grape | cytosol | 17.8 | 18.52 |
| VIT_03s0038g00020.t01 | Wine grape | cytosol | 1.94 | 16.44 |
Protein Annotations
| EntrezGene:100248925 | wikigene:100248925 | MapMan:13.4.2.4 | Gene3D:3.40.50.2060 | ProteinID:CCB61385 | ProteinID:CCB61385.1 |
| UniProt:F6I368 | EMBL:FN596739 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016192 | EntrezGene:LOC100248925 | wikigene:LOC100248925 | PFAM:PF00995 | PIRSF:PIRSF005715 | PANTHER:PTHR11679 |
| PANTHER:PTHR11679:SF59 | SUPFAM:SSF56815 | InterPro:Sec1-like | InterPro:Sec1-like_sf | UniParc:UPI000210A83C | ArrayExpress:VIT_15s0048g00970 |
| EnsemblPlantsGene:VIT_15s0048g00970 | EnsemblPlants:VIT_15s0048g00970.t01 | unigene:Vvi.20721 | RefSeq:XP_002278966 | RefSeq:XP_002278966.1 | SEG:seg |
Description
No Description!
Coordinates
chr15:-:15111064..15125187
Molecular Weight (calculated)
69902.1 Da
IEP (calculated)
7.842
GRAVY (calculated)
-0.429
Length
618 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKVTTKVMS SSCKMADITD EGISLVEDLY RRRQPLPSLD AIYFIQPSKE NVVMFLSDMS GRVPLYKKAF VFFSSPIPKD LVNHIKSDTS VLPRIGALRE
101: MNLEYFPVDS QAFITDHERA LEELLGENVE NTRKFDNCLN TMATRISTIF ASLKELPLVR YRAAKTLDGS AVATFRDLVP TKLAAAVWNS LEKYKSTIPN
201: FPQTGTCELL ILDRSIDQIA PVIHEWTYDA MCHDLLEMDG NKYVHEIPSK TGGEPEKKEV LLEDHDPVWL ELRHVHIADA SERLHDKMTN FVSKNKAAQL
301: HQRDSNELST RDLQKMVQAL PQYSEQMEKL SLHVEIAGKI NRTIREMGLR DLGQLEQDLV FGDVGAKEVI NFLRTKQDAT SENKLRLLMI YASVYPEKFE
401: GDKGLKLMQL ARLSPEDMKV VNNMRLLEGS SATKKKSSGG FSLKFDGQKV KNAARKDRTT EEETWQLSRF YPMIEELIEK LNKGELPKNE YLCMNEPSPP
501: VPRSTDGASA RTSQAPASQP VKSRRTATWA RSRVSDDGCS SDSVLKNVSV DFKNMGQRIF VFIIGGATRS ELRVCHKLTA KLRREVVLGS SSIDDPPQFI
601: TKLKMLSEKD ISLDGIRI
101: MNLEYFPVDS QAFITDHERA LEELLGENVE NTRKFDNCLN TMATRISTIF ASLKELPLVR YRAAKTLDGS AVATFRDLVP TKLAAAVWNS LEKYKSTIPN
201: FPQTGTCELL ILDRSIDQIA PVIHEWTYDA MCHDLLEMDG NKYVHEIPSK TGGEPEKKEV LLEDHDPVWL ELRHVHIADA SERLHDKMTN FVSKNKAAQL
301: HQRDSNELST RDLQKMVQAL PQYSEQMEKL SLHVEIAGKI NRTIREMGLR DLGQLEQDLV FGDVGAKEVI NFLRTKQDAT SENKLRLLMI YASVYPEKFE
401: GDKGLKLMQL ARLSPEDMKV VNNMRLLEGS SATKKKSSGG FSLKFDGQKV KNAARKDRTT EEETWQLSRF YPMIEELIEK LNKGELPKNE YLCMNEPSPP
501: VPRSTDGASA RTSQAPASQP VKSRRTATWA RSRVSDDGCS SDSVLKNVSV DFKNMGQRIF VFIIGGATRS ELRVCHKLTA KLRREVVLGS SSIDDPPQFI
601: TKLKMLSEKD ISLDGIRI
001: MLGSTKTGDS KAWKILIMDR VTVKVMSQSC KMADITDQGI SLVEELFKRR EPMPGMDAIY FIQPSKENIV MFLSDMSGRE PLYRKAFIFF SSTIPKELVN
101: HIKSDSSVLP RIGALREMNM EYFPIDNQGF LTDHEQALET LYAEDAENSR HFHICLNIMA TRIATVFASL KELPFVRYRA AKSTASRDLV PSKLAAAIWD
201: CISKYKAIPN FPQTETCELL IVDRSVDQIA PIIHEWTYDA MCHDLLDMEG NKHVIEVPSK TGGPPEKKEI VLEDHDPVWL ELRHTHIADA SERLHEKMTN
301: FASKNKAAQM RSRDGSELST RDLQKIVQAL PQYGEQVDKL STHVELAGKI NRIIRDTGLR DLGQLEQDLV FGDAGAKDVI NFLRTNQDTN PENKLRLLMI
401: YATVYPEKFE GDKGVKLMQL ARLSPVDMKV ISNMQLIAGS PENKAKSGSF SLKFDAGKTK QANRKDRSGE EETWQLFRFY PMIEELLEKL VKGDLSKSDY
501: LCMNQSSHKE ESEARTGSVR KSSAPTAVPE RKATPHSMRS RRTATWARPH SSDDGYSSDS VLKSASTEFK KLGQRIFVFI IGGATRSELR VCHKLTSSLR
601: REVVLGSTSF DDPPQYITKL KLLSEKDIQG APAQPFKPQY W
101: HIKSDSSVLP RIGALREMNM EYFPIDNQGF LTDHEQALET LYAEDAENSR HFHICLNIMA TRIATVFASL KELPFVRYRA AKSTASRDLV PSKLAAAIWD
201: CISKYKAIPN FPQTETCELL IVDRSVDQIA PIIHEWTYDA MCHDLLDMEG NKHVIEVPSK TGGPPEKKEI VLEDHDPVWL ELRHTHIADA SERLHEKMTN
301: FASKNKAAQM RSRDGSELST RDLQKIVQAL PQYGEQVDKL STHVELAGKI NRIIRDTGLR DLGQLEQDLV FGDAGAKDVI NFLRTNQDTN PENKLRLLMI
401: YATVYPEKFE GDKGVKLMQL ARLSPVDMKV ISNMQLIAGS PENKAKSGSF SLKFDAGKTK QANRKDRSGE EETWQLFRFY PMIEELLEKL VKGDLSKSDY
501: LCMNQSSHKE ESEARTGSVR KSSAPTAVPE RKATPHSMRS RRTATWARPH SSDDGYSSDS VLKSASTEFK KLGQRIFVFI IGGATRSELR VCHKLTSSLR
601: REVVLGSTSF DDPPQYITKL KLLSEKDIQG APAQPFKPQY W
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.