Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G542100.1 | Wheat | cytosol | 93.95 | 96.96 |
| TraesCS3A01G538700.1 | Wheat | cytosol | 93.81 | 96.8 |
| TraesCS3B01G607200.1 | Wheat | cytosol | 93.66 | 96.65 |
| Os06t0135900-01 | Rice | plasma membrane | 66.22 | 86.02 |
| KXG19223 | Sorghum | cytosol | 81.42 | 84.4 |
| Zm00001d045434_P004 | Maize | cytosol | 80.83 | 79.54 |
| HORVU6Hr1G043530.1 | Barley | cytosol | 6.49 | 75.86 |
| GSMUA_Achr9P24460_001 | Banana | cytosol | 64.9 | 66.36 |
| HORVU6Hr1G043520.1 | Barley | cytosol | 7.52 | 65.38 |
| VIT_15s0048g00970.t01 | Wine grape | cytosol | 59.44 | 65.21 |
| VIT_15s0045g00060.t01 | Wine grape | cytosol | 43.51 | 64.69 |
| HORVU6Hr1G043390.4 | Barley | cytosol | 54.28 | 61.54 |
| KRH76261 | Soybean | nucleus | 60.03 | 60.75 |
| KRH65274 | Soybean | cytosol | 59.73 | 60.54 |
| PGSC0003DMT400020076 | Potato | cytosol | 46.31 | 60.15 |
| Bra032660.1-P | Field mustard | cytosol | 52.8 | 60.07 |
| CDY38041 | Canola | nucleus | 59.14 | 59.41 |
| Solyc01g091300.2.1 | Tomato | nucleus | 45.58 | 58.86 |
| AT1G02010.4 | Thale cress | cytosol, nucleus, peroxisome | 60.18 | 58.04 |
| Solyc01g091290.2.1 | Tomato | cytosol, unclear | 15.78 | 57.53 |
| HORVU2Hr1G011610.5 | Barley | plastid | 56.05 | 53.07 |
| HORVU2Hr1G062800.7 | Barley | cytosol, plastid | 17.85 | 19.27 |
| HORVU5Hr1G009740.2 | Barley | cytosol, mitochondrion | 16.37 | 17.32 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G117280.1 | EnsemblPlantsGene:HORVU3Hr1G117280 | Gene3D:3.40.50.2060 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016192 | InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF59 |
| PFAM:PF00995 | PIRSF:PIRSF005715 | SUPFAM:SSF56815 | UniParc:UPI000B4795B7 | UniProt:A0A287MUC5 | MapMan:13.4.2.4 |
Description
No Description!
Coordinates
chrchr3H:+:697794475..697803703
Molecular Weight (calculated)
76102.3 Da
IEP (calculated)
8.126
GRAVY (calculated)
-0.471
Length
678 amino acids
Sequence
(BLAST)
(BLAST)
001: GAGDRQGDGG RWPVRVGCGG EMSMSGADFN GVGEDPRVFR NICRDRILKD MLKPDKDKET KSSWKVLIMD KFTVRIMGYA CKMAEITDAG VSLVEDLFKR
101: REPMPSMDVI YFVQPLKENV IMLLSDMSGR CPLYRKAYIF FSSPIPKDLV TYIKNDSSVI PRIGALREMN LEFFAIDMQG FVTDHDMALT DLYGANENNS
201: KKFNDTISTM ACRIATTFAS LKEFPTVRYR APKSADPSTA PKFDMVPKWL ATATWEIVSK YKSTIPEFPQ KETCELLVLD RPIDQIAPVI HEWTYDAMCH
301: DLLEMDGNKY IYEVSKGDAE PEKKEALLED QDPLWIELRH THIADASERL YEKMNTFVSK NKAAQLHSRD GGEISTTDLQ KIVQALPQYG EQVDKLTLHI
401: DIAGKINRCI REFGLRDLGQ LEQDLVFGDA GAKEVINMLR SKQNLSEENK LRLLIIYAIV CPDKFEGDKG DKLMQLAKLP SDDMKAINSL RYLVSSDAKK
501: AARAGGFSLK FDAQKKKNTG VRTERQDGEE GWALSRFFPL IEELVEKLSK GELPLNEYPS LSQPSSTSQG TAESGSAPKP AQNPQPMSRR SRRTPQWAKG
601: RNSDDGQSSD SSVLRHASGD FKRLGNRIFV FIVGGATRSE LRVAHKLTMK LKREIVLGSS SIDNPPQFIS KLKALGPS
101: REPMPSMDVI YFVQPLKENV IMLLSDMSGR CPLYRKAYIF FSSPIPKDLV TYIKNDSSVI PRIGALREMN LEFFAIDMQG FVTDHDMALT DLYGANENNS
201: KKFNDTISTM ACRIATTFAS LKEFPTVRYR APKSADPSTA PKFDMVPKWL ATATWEIVSK YKSTIPEFPQ KETCELLVLD RPIDQIAPVI HEWTYDAMCH
301: DLLEMDGNKY IYEVSKGDAE PEKKEALLED QDPLWIELRH THIADASERL YEKMNTFVSK NKAAQLHSRD GGEISTTDLQ KIVQALPQYG EQVDKLTLHI
401: DIAGKINRCI REFGLRDLGQ LEQDLVFGDA GAKEVINMLR SKQNLSEENK LRLLIIYAIV CPDKFEGDKG DKLMQLAKLP SDDMKAINSL RYLVSSDAKK
501: AARAGGFSLK FDAQKKKNTG VRTERQDGEE GWALSRFFPL IEELVEKLSK GELPLNEYPS LSQPSSTSQG TAESGSAPKP AQNPQPMSRR SRRTPQWAKG
601: RNSDDGQSSD SSVLRHASGD FKRLGNRIFV FIVGGATRSE LRVAHKLTMK LKREIVLGSS SIDNPPQFIS KLKALGPS
001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.