Factsheet for HORVU2Hr1G062800.7

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU7Hr1G008640.2
HORVU7Hr1G008670.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	HORVU7Hr1G008640.2	AT4G02195.1	10888666
AT1G77140.1	HORVU7Hr1G008670.5	AT4G02195.1	10888666
AT1G77140.1	HORVU7Hr1G008640.2	AT5G26980.1	10888666
AT1G77140.1	HORVU7Hr1G008670.5	AT5G26980.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G277800.2	Wheat	cytosol	89.97	99.65
TraesCS2A01G264300.1	Wheat	cytosol	89.97	99.65
TraesCS2D01G259600.1	Wheat	cytosol	89.81	99.47
Os02t0437800-02	Rice	cytosol, plasma membrane	82.96	91.89
EES13788	Sorghum	cytosol	82.96	91.89
Zm00001d049522_P001	Maize	cytosol, plasma membrane	82.96	82.31
GSMUA_Achr10P...	Banana	cytosol	72.45	80.53
VIT_18s0001g15600.t01	Wine grape	cytosol	71.5	79.05
CDX79189	Canola	cytosol	34.39	78.55
KRH64544	Soybean	endoplasmic reticulum	70.7	78.17
KRH53395	Soybean	cytosol	70.7	78.17
Bra008294.1-P	Field mustard	cytosol	69.11	76.27
AT1G77140.1	Thale cress	cytosol	69.11	76.27
Solyc04g064820.2.1	Tomato	cytosol, nucleus	68.95	76.23
CDY38360	Canola	cytosol	68.95	76.1
CDY70457	Canola	cytosol	41.72	73.18
CDX79215	Canola	cytosol	46.02	69.81
CDY13575	Canola	cytosol	60.83	66.67
CDX79223	Canola	cytosol, plastid	6.53	62.12
VIT_03s0038g00020.t01	Wine grape	cytosol	7.17	61.64
CDX79222	Canola	cytosol, mitochondrion	19.11	44.28
CDY71507	Canola	cytosol, golgi	18.95	40.07
HORVU6Hr1G043520.1	Barley	cytosol	3.5	28.21
HORVU3Hr1G117280.1	Barley	cytosol	19.27	17.85
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	18.15	17.78
HORVU6Hr1G043390.4	Barley	cytosol	16.72	17.56
Solyc10g074510.1.1	Tomato	cytosol	1.59	16.39
Solyc10g074520.1.1	Tomato	cytosol	7.48	15.56
HORVU2Hr1G011610.5	Barley	plastid	17.52	15.36
HORVU6Hr1G043530.1	Barley	cytosol	1.11	12.07

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	UniProt:A0A287I6P0
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006886	GO:GO:0006904	GO:GO:0008150
GO:GO:0009705	GO:GO:0009987	GO:GO:0016020	GO:GO:0016192	EnsemblPlantsGene:HORVU2Hr1G062800	EnsemblPlants:HORVU2Hr1G062800.7
InterPro:IPR027482	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI000B477E21	:	:

Description

No Description!

Coordinates

chrchr2H:+:423721989..423732362

Molecular Weight (calculated)

70959.0 Da

IEP (calculated)

6.710

GRAVY (calculated)

-0.253

Length

628 amino acids

Sequence
(BLAST)

001: KEANRSSLPS AVYALLPTAG SFPFASAPCS YSAQTSPPAT RDLAPTPTPH RTEEQGAVTE EMVLIPLIRD YIDRMLQDIS GMKVLILDPQ TVGMVSVVYS
101: QSDLLRKEVF LVETVDDASS SRASMAHLKA VYFLRPSSDN VQKLRRHLSA PRFAECHLFF SNILKIPQIQ VLADSDEQEV VQQIQEFYAD FCAIDPFHFT
201: LNIHNNHIYM LPTVVDPPGM QSFCDRAVDG IASVFLALKR RPVIRYQRTS DVAKRIAQET TRLMYEQESG LFDFRRTENS SLLLVIDRRD DPVTPLLNQW
301: TYQAMVHELI GIENNKVDLK EFANVPKDQQ EVVLSAVQDD FYRVNMFENF GDLGMNVKRM VDDFQHLSKS SQNFQSIDDM AKFVTNYPEY RKTHGNVTKH
401: VALVSEMSRM VEERKLMQVS QTEQELACAS GQAAAFEAVT SLLNNESVSD IDRLRLVMLY ALRYEKESPV QLMQLFNKLA SRSAKYKSGL VQFLLKQAGV
501: DKRTGDLYGN RDLLNIARNM ARGLKGVENV YTQHQPLIFQ TMEGIVKGRL RDADYPLVGN HFQQGRPQDV VIFIVGGTTY EEARSVALYN AANPGVRFFL
601: GGSVVLNSKR FLENLGEAQR ISKSSTLL

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.