Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G043530.1 | Barley | cytosol | 9.7 | 100.0 |
| TraesCS6D01G179600.1 | Wheat | nucleus | 97.83 | 88.37 |
| TraesCS6B01G231900.1 | Wheat | nucleus | 97.66 | 88.22 |
| TraesCS6A01G193500.1 | Wheat | cytosol | 97.32 | 87.92 |
| HORVU6Hr1G043520.1 | Barley | cytosol | 10.54 | 80.77 |
| OQU84878 | Sorghum | nucleus | 88.8 | 80.33 |
| Zm00001d015890_P002 | Maize | cytosol | 88.63 | 77.94 |
| GSMUA_Achr7P16530_001 | Banana | nucleus | 77.42 | 69.62 |
| GSMUA_Achr7P16520_001 | Banana | cytosol | 77.59 | 69.46 |
| HORVU2Hr1G011610.5 | Barley | plastid | 74.08 | 61.87 |
| HORVU3Hr1G117280.1 | Barley | cytosol | 61.54 | 54.28 |
| HORVU5Hr1G009740.2 | Barley | cytosol, mitochondrion | 19.73 | 18.41 |
| HORVU2Hr1G062800.7 | Barley | cytosol, plastid | 17.56 | 16.72 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G043390.4 | EnsemblPlantsGene:HORVU6Hr1G043390 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | Gene3D:3.90.830.10 | GO:GO:0006810 |
| GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:IPR027482 | InterPro:Sec-1-like_dom2 |
| InterPro:Sec1-like | InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF42 | PFAM:PF00995 | PIRSF:PIRSF005715 |
| SEG:seg | SUPFAM:SSF56815 | UniParc:UPI000B46BAA0 | UniProt:A0A287U269 | MapMan:13.4.2.4 | : |
Description
No Description!
Coordinates
chrchr6H:+:245403141..245553251
Molecular Weight (calculated)
67739.2 Da
IEP (calculated)
7.480
GRAVY (calculated)
-0.412
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDSDSSSQ GGHRRSFRQI TRDRLLFEML RSTRKGSKSA WKVLIMDKFT VKIMSYSCKM ADITEEGVSL VEDLYKRRQP LPSLDAIYFI QPTKENVVMF
101: LSDMSGRSPL YKKAYVFFSS PIQKDLVAQI KRDSSILPRI GALSEMNLEY FPIDSQGFIT DHERALEELF CESAEGFNKY NACLNAMATR ISTVFASMRE
201: FPRVHYRIAK TIDASTMTTL RDMVPTKIAA GVWNYLSKYK TSIPEFPQTE TCELLIVDRS VDQIAPIIHE WTYDAMCHDL LCMDGNKYVH EVSSKNGSAS
301: GNKEVLLEDH DPVWLELRHS HIADASERLH DKMTHFVSKN KAAQLHQVRT GGELSTRDLQ KMVQALPQYT DQIDKLSLHV EIAGKLNAII REQCLRDVGQ
401: LEQDLVFGDA GTKELINFFQ TQLGVSRENK LRLLMIYAAI NPEKFENDKG TKMMQELIEQ LSKGELPKDE YNCMNDPSPS FHVVPTTTST SARTSPAHSM
501: RSRKTGGSWA RPRGSDDGYS SDSVLKHASS DFQKHGQRIF VFVIGGATRS ELRAAHKLTS KLKREVILGS SSLDDPPQFI TKLKMMSAEE LTLDDLHI
101: LSDMSGRSPL YKKAYVFFSS PIQKDLVAQI KRDSSILPRI GALSEMNLEY FPIDSQGFIT DHERALEELF CESAEGFNKY NACLNAMATR ISTVFASMRE
201: FPRVHYRIAK TIDASTMTTL RDMVPTKIAA GVWNYLSKYK TSIPEFPQTE TCELLIVDRS VDQIAPIIHE WTYDAMCHDL LCMDGNKYVH EVSSKNGSAS
301: GNKEVLLEDH DPVWLELRHS HIADASERLH DKMTHFVSKN KAAQLHQVRT GGELSTRDLQ KMVQALPQYT DQIDKLSLHV EIAGKLNAII REQCLRDVGQ
401: LEQDLVFGDA GTKELINFFQ TQLGVSRENK LRLLMIYAAI NPEKFENDKG TKMMQELIEQ LSKGELPKDE YNCMNDPSPS FHVVPTTTST SARTSPAHSM
501: RSRKTGGSWA RPRGSDDGYS SDSVLKHASS DFQKHGQRIF VFVIGGATRS ELRAAHKLTS KLKREVILGS SSLDDPPQFI TKLKMMSAEE LTLDDLHI
001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREM NMEYFPIDNQ GFLTDHEQAL ETLYAEDAEN SRHFHICLNI MATRIATVFA
201: SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK
301: EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD KLSTHVELAG KINRIIRDTG LRDLGQLEQD
401: LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA GSPENKAKSG SFSLKFDAGK TKQANRKDRS
501: GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM RSRRTATWAR PHSSDDGYSS DSVLKSASTE
601: FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP QYW
Arabidopsis Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.