CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX73599
CDX74445
CDX74451
CDX78128
CDX95233
CDX97432
CDY13344
CDY22037
CDY30250
CDY37005
CDY52786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	CDX67539	AT3G52850.1	10888666
AT1G77140.1	CDX73599	AT3G52850.1	10888666
AT1G77140.1	CDX78128	AT3G52850.1	10888666
AT1G77140.1	CDY13344	AT3G52850.1	10888666
AT1G77140.1	CDX97432	AT4G02195.1	10888666
AT1G77140.1	CDY22037	AT4G02195.1	10888666
AT1G77140.1	CDY52786	AT4G02195.1	10888666
AT1G77140.1	CDX74445	AT5G39510.1	10888666
AT1G77140.1	CDX74451	AT5G39510.1	10888666
AT1G77140.1	CDX95233	AT5G39510.1	10888666
AT1G77140.1	CDY30250	AT5G39510.1	10888666
AT1G77140.1	CDY37005	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79189	Canola	cytosol	46.77	97.45
Bra008294.1-P	Field mustard	cytosol	87.96	88.58
CDY38360	Canola	cytosol	87.78	88.4
AT1G77140.1	Thale cress	cytosol	85.34	85.94
CDY70457	Canola	cytosol	50.96	81.56
VIT_18s0001g15600.t01	Wine grape	cytosol	75.39	76.06
Solyc04g064820.2.1	Tomato	cytosol, nucleus	75.04	75.7
KRH64544	Soybean	endoplasmic reticulum	74.52	75.18
KRH53395	Soybean	cytosol	73.82	74.47
CDX79215	Canola	cytosol	53.58	74.15
GSMUA_Achr10P...	Banana	cytosol	71.73	72.74
TraesCS2D01G259600.1	Wheat	cytosol	66.84	67.55
TraesCS2B01G277800.2	Wheat	cytosol	66.84	67.55
TraesCS2A01G264300.1	Wheat	cytosol	66.84	67.55
Os02t0437800-02	Rice	cytosol, plasma membrane	66.84	67.55
EES13788	Sorghum	cytosol	66.84	67.55
HORVU2Hr1G062800.7	Barley	cytosol, plastid	66.67	60.83
Zm00001d049522_P001	Maize	cytosol, plasma membrane	67.19	60.82
CDX79222	Canola	cytosol, mitochondrion	26.53	56.09
CDY71507	Canola	cytosol, golgi	19.72	38.05
CDX79223	Canola	cytosol, plastid	2.79	24.24
CDY52164	Canola	cytosol	2.27	24.07
CDY39875	Canola	cytosol	10.99	19.27
CDY26558	Canola	cytosol	5.24	18.87
CDX94488	Canola	cytosol	20.42	17.59
CDX86721	Canola	cytosol	20.07	17.45
CDY26559	Canola	cytosol	19.9	17.12
CDY15993	Canola	cytosol	19.9	17.09
CDY68111	Canola	cytosol	19.9	17.04
CDX90817	Canola	cytosol	19.9	17.04
CDY30074	Canola	cytosol	19.72	16.92
CDX98070	Canola	cytosol	19.55	16.84
CDY29213	Canola	cytosol	17.28	16.45
CDY63506	Canola	cytosol	17.28	16.45
CDY38041	Canola	nucleus	17.63	14.96
CDY52165	Canola	cytosol	9.25	14.72
CDY48989	Canola	cytosol	7.85	14.61
CDY49318	Canola	plastid	2.79	13.11

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	GO:A0A078FGM6
UniProt:A0A078FGM6	EnsemblPlants:CDY13575	ProteinID:CDY13575	ProteinID:CDY13575.1	GO:GO:0005575	GO:GO:0006810
GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
EnsemblPlantsGene:GSBRNA2T00077975001	InterPro:IPR027482	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3
SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	TMHMM:TMhelix	UniParc:UPI0004EE0075
SEG:seg	:	:	:	:	:

Description

BnaC02g23860DBnaC02g23860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGM6]

Coordinates

chrLK032036:+:829887..833278

Molecular Weight (calculated)

65197.8 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.164

Length

573 amino acids

Sequence
(BLAST)

001: MALVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISAS NESMSHLKAV YFVRPTSENV QKLRHQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQSLSLSL SLSLSLSLSL SLSLLILVLS PFLTERREKR RSRSSVVMEI AAMTVMGTCL QLAFSLRISC VLCSFELRDT
201: FVFQKLMYQH ESGLFDFRRT ESSPLLLVID RRDDPVTPLL NQWTYQAMVH ELIGLQDNKV DLRAIGSLPK DQQVEVVLSS EQDAFFKSNM YENFGDIGMN
301: IKRMVDDFQQ VAKSNQNIQT VEDMARFVDN YPEYKKMQGN VSKHVTLVTE MSKLVEARKL MLVSQTEQDL ACNGGQGAAY EAVTDLLNNE SVSDIDRLRL
401: VMLYALRYEK ENPVQLMQLF NKLASRSPKY KQGLVQFLLK QAGVEKRTGD LFGNRDLLNI ARNMARGLKG VENVYTQHQP LLFQTMESIT RGRLRDVDYP
501: FVGDHFQQGR PQEVVIFMVG GTTYEESRCV ALQNSTNSGI RFILGGTAVL NSKRFLMDLE EAQRISRSGS HMV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.