CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52164	Canola	cytosol	6.12	37.04
CDY29213	Canola	cytosol	62.69	34.05
CDY63506	Canola	cytosol	62.08	33.72
GSMUA_Achr3P26940_001	Banana	cytosol	54.74	31.63
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	55.35	28.91
TraesCS5D01G045800.1	Wheat	plastid	54.43	28.71
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	54.43	28.71
Zm00001d051824_P001	Maize	plasma membrane	55.05	28.66
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	54.43	28.62
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	54.43	27.77
Os03t0620800-01	Rice	plasma membrane	52.6	27.61
OQU91892	Sorghum	cytosol, mitochondrion	51.38	26.92
Zm00001d030527_P001	Maize	cytosol, mitochondrion	51.07	26.89
CDY52165	Canola	cytosol	26.91	24.44
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	28.44	19.1
CDY26558	Canola	cytosol	9.17	18.87
CDY48989	Canola	cytosol	15.6	16.56
CDX79189	Canola	cytosol	10.4	12.36
CDX79215	Canola	cytosol	15.6	12.32
CDY70457	Canola	cytosol	12.54	11.45
CDY38360	Canola	cytosol	19.57	11.25
CDY13575	Canola	cytosol	19.27	10.99
CDY26559	Canola	cytosol	21.41	10.51
CDY15993	Canola	cytosol	21.41	10.49
CDY30074	Canola	cytosol	21.41	10.48
CDX86721	Canola	cytosol	21.1	10.47
CDX98070	Canola	cytosol	20.8	10.23
CDY49318	Canola	plastid	3.67	9.84
CDX94488	Canola	cytosol	19.88	9.77
CDY68111	Canola	cytosol	19.27	9.42
CDX90817	Canola	cytosol	19.27	9.42
CDY38041	Canola	nucleus	18.35	8.89
CDX79222	Canola	cytosol, mitochondrion	5.5	6.64
CDY71507	Canola	cytosol, golgi	4.89	5.39
CDX79223	Canola	cytosol, plastid	0.92	4.55

Protein Annotations

Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	MapMan:35.1	GO:A0A078HMX4	UniProt:A0A078HMX4	EnsemblPlants:CDY39875
ProteinID:CDY39875	ProteinID:CDY39875.1	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987
GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00068706001	InterPro:IPR027482	PFAM:PF00995	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60
SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0004EE4402	SEG:seg

Description

BnaC03g67420DBnaC03g67420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMX4]

Coordinates

chrLK032459:+:26043..27453

Molecular Weight (calculated)

36111.1 Da

IEP (calculated)

6.049

GRAVY (calculated)

-0.252

Length

327 amino acids

Sequence
(BLAST)

001: MLNLNQPLNP NGHCYKMLIY DDFCKKIIDP LMSVKDLLRH GVTLNSPIDK KLLTNRTERD DVPDVAVYFV QPTESNIQKI TADASTISPY VHFHLNFSSS
101: IPRPLLHSLA SQTLSSGSVA RLAKHLMNAV NSLPEMKARK EMIDKHTNIA TNLLGEIKER SLDVFTEEEN EMMKGGSIDI IKVLAVLNEK ETEAVEAALP
201: SADSASSSNV VDWAEKLYDH SISAVTAGVK NLLSSNQQLA VARTVEALAK GQPNLETDPY IMLDPKASKT GSSGCSHVNE PFREAIVFMV GGGNYIEYNS
301: LQELSQRNEV VKNVITYNSF SSSIMQR

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.