Factsheet for Zm00001d030527_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91892	Sorghum	cytosol, mitochondrion	94.36	93.91
TraesCS5D01G045800.1	Wheat	plastid	85.02	85.16
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	84.86	85.0
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	84.86	84.73
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	84.22	81.59
Os03t0620800-01	Rice	plasma membrane	80.35	80.1
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	61.84	78.85
Zm00001d051824_P001	Maize	plasma membrane	78.26	77.39
CDY52164	Canola	cytosol	5.64	64.81
GSMUA_Achr3P26940_001	Banana	cytosol	58.94	64.66
KRH58359	Soybean	endoplasmic reticulum	62.64	62.54
Solyc01g112150.2.1	Tomato	plastid	62.16	62.26
KRH42240	Soybean	endoplasmic reticulum, nucleus	62.32	62.22
PGSC0003DMT400038058	Potato	cytosol	62.0	62.1
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.07	61.99
VIT_03s0038g03110.t01	Wine grape	cytosol	59.1	61.78
CDY63506	Canola	cytosol	58.62	60.47
CDY29213	Canola	cytosol	58.45	60.3
AT2G17980.1	Thale cress	mitochondrion	60.23	59.65
Bra024484.1-P	Field mustard	cytosol	60.39	58.87
PGSC0003DMT400043339	Potato	cytosol	30.11	57.01
CDY52165	Canola	cytosol	31.4	54.17
CDY39875	Canola	cytosol	26.89	51.07
CDY48989	Canola	cytosol	24.96	50.32
Bra032934.1-P	Field mustard	cytosol	25.12	50.16
Zm00001d049522_P001	Maize	cytosol, plasma membrane	19.65	19.27
Zm00001d004159_P003	Maize	cytosol, plastid	19.81	18.3
Zm00001d015890_P002	Maize	cytosol	19.65	17.94
Zm00001d045434_P004	Maize	cytosol	17.55	15.82

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100382068	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1
EMBL:BT063051	EMBL:BT064257	UniProt:C0P432	ncoils:Coil	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	ProteinID:ONM01064.1	ProteinID:ONM01065.1
PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2
InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0001948B84	EnsemblPlantsGene:Zm00001d030527	EnsemblPlants:Zm00001d030527_P001	EnsemblPlants:Zm00001d030527_T001
SEG:seg	:	:	:	:	:

Description

SEC1 family transport protein SLY1

Coordinates

chr1:+:141837963..141840471

Molecular Weight (calculated)

67281.6 Da

IEP (calculated)

5.823

GRAVY (calculated)

-0.103

Length

621 amino acids

Sequence
(BLAST)

001: MTLSLRRKQL DVIVRMLHLN QQQLPNGGEG QGEDDAYKIL VMDPPCISIL SPVLKLGDLR HQGVTLTLAI DRPRQAVPDA PAVYFVRPTP GNVDRVAADA
101: AAGLYGSFHV NFSTSVPRPL LERLATACAA APPACAGRVA RVADQYIDFV CIEDDLFSLA QPRAYVALND PAAADADITA LVDAVALGLF CVVATLGVVP
201: VISCARGGPA EMVAGALDAR LRDHLLAKPN LFTEAASAAV TSFQRPVLCL FDRNFELSVG VQHDWSYRPL VHDVLGLKQN KLKLPAEKYE LDDSDKFWVA
301: NSWSPFPKVA EEIEAQLAKY KQDVDEVNQH TGGGKVGVEF DGTDLIGNTK HLMNAVNSLP ELTERKNMID KHTNIATSLL GHIKERSLDG YCSCENDMLV
401: SGTVDRNTLL SLIRGKGTKE DKLRLAVTYL LSFATPPSSE LEQVEAALRE SEVDMSAFQY VKRIKALLNT QFAAASGTAT KSNIVDWAEK LYGQSIGAVK
501: NLLSDSRQLA LTRTVEALME GKPNPEVDDY LLFDPRAPRS GTSGQFKGPF REAVVFMIGG GNYIEYKSLI ELKQRSQPSK HVIYGATEIL SGAEFIHQLA
601: ELGQKAGLGG GSSNIPPGSA Q

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.