Factsheet for Solyc01g112150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038058	Potato	cytosol	98.39	98.39
VIT_03s0038g03110.t01	Wine grape	cytosol	83.06	86.7
KRH58359	Soybean	endoplasmic reticulum	84.35	84.08
KRH42240	Soybean	endoplasmic reticulum, nucleus	84.03	83.76
Solyc10g074520.1.1	Tomato	cytosol	39.84	81.79
CDY29213	Canola	cytosol	76.77	79.07
CDY63506	Canola	cytosol	76.61	78.9
Solyc10g074510.1.1	Tomato	cytosol	7.74	78.69
AT2G17980.1	Thale cress	mitochondrion	79.19	78.31
Bra024484.1-P	Field mustard	cytosol	80.16	78.02
GSMUA_Achr3P26940_001	Banana	cytosol	66.13	72.44
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.84	71.93
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	67.1	66.45
TraesCS5D01G045800.1	Wheat	plastid	66.45	66.45
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	66.29	66.29
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	66.29	66.08
Zm00001d051824_P001	Maize	plasma membrane	66.45	65.61
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	66.29	64.12
OQU91892	Sorghum	cytosol, mitochondrion	63.39	62.98
Os03t0620800-01	Rice	plasma membrane	62.58	62.28
Zm00001d030527_P001	Maize	cytosol, mitochondrion	62.26	62.16
CDY48989	Canola	cytosol	29.35	59.09
Bra032934.1-P	Field mustard	cytosol	29.35	58.52
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	42.26	53.8
Solyc08g079520.2.1	Tomato	nucleus	21.61	20.12
Solyc04g064820.2.1	Tomato	cytosol, nucleus	18.39	20.07
Solyc01g091290.2.1	Tomato	cytosol, unclear	5.81	19.35
Solyc01g091300.2.1	Tomato	nucleus	13.87	16.38

Protein Annotations

Gene3D:1.25.40.60	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1	ncoils:Coil
GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482
UniProt:K4B476	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	EnsemblPlantsGene:Solyc01g112150.2	EnsemblPlants:Solyc01g112150.2.1	UniParc:UPI0002767AC9
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:98229609..98232277

Molecular Weight (calculated)

69155.1 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.200

Length

620 amino acids

Sequence
(BLAST)

001: MALNLRQKQT ECITRMLNLN QPVNAGATAN EEVYKILIYD RFCQDILSPL IHVKDLRKHG VTLYFLIDKD RKPVHDVPAL YFVQPTHLNV QRIVADASKS
101: LYDSFHLNFS SSVPRPLLED LASGTINSDS IERISKVHDQ YLEFVTLEDN LFSLAYKNCY LQLNDPSAGD KEIEEIIEKI VSGLFCVLAT LAVVPIIRCP
201: RGGPAEMVAS LLDQRLRDHL LAKNNLFSEA GNFTSSFQRP ILCLFDRNFE LSVAIQHDFR YRPLVHDVLG LRLNRLSVQG EKGGMKSFEL DRSDPFWVAN
301: WSLVFPEVAM EIEAQLKKYK QDVEEVNKRT GGNPGAEFDG TDLVGNTKHL MNAVNSLPEL TERKQVIDKH TNIATALLGE IKERSLDSYA KKENDMMVRG
401: VIDRSELIGA LKGKGTKVDK LRFAIMYLIS TESLPQSEVE MIETALRESE VDTTAFQYVK KIKSLNVSLA SANSASRSNI VDWAEKLYGQ SISAVTAGVK
501: NLLSSDHQLA LSRTVEALME GKPNPEIDSY IIFDPRAPKS NSGMSSSHLK GPFKEAIVFM IGGGNYVEYG SLQELANRQQ PVKHVIYGTT EILTGGEFIE
601: QLALLGQKMG LGTSVATPAH

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.