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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, cytosol

Predictor Summary:
  • plastid 1
  • cytosol 4
  • golgi 1
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, unclear
Any Predictor:cytosol, golgi, mitochondrion, nucleus, plastid
BaCelLo:plastid
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra032660.1-P Field mustard cytosol 67.2 20.97
Os06t0135900-01 Rice plasma membrane 55.38 19.73
KRH65274 Soybean cytosol 70.43 19.58
CDY38041 Canola nucleus 69.89 19.26
KRH76261 Soybean nucleus 69.35 19.25
AT1G02010.4 Thale cress cytosol, nucleus, peroxisome 68.82 18.21
Solyc08g079520.2.1 Tomato nucleus 64.52 18.02
GSMUA_Achr9P24460_001 Banana cytosol 63.44 17.8
KXG19223 Sorghum cytosol 57.53 16.36
VIT_15s0048g00970.t01 Wine grape cytosol 54.3 16.34
TraesCS3D01G542100.1 Wheat cytosol 56.45 15.98
TraesCS3B01G607200.1 Wheat cytosol 56.45 15.98
TraesCS3A01G538700.1 Wheat cytosol 56.45 15.98
HORVU3Hr1G117280.1 Barley cytosol 57.53 15.78
Zm00001d045434_P004 Maize cytosol 58.06 15.67
Solyc01g112150.2.1 Tomato plastid 19.35 5.81
Solyc04g064820.2.1 Tomato cytosol, nucleus 15.05 4.93
Solyc01g091300.2.1 Tomato nucleus 6.45 2.29
VIT_15s0045g00060.t01 Wine grape cytosol 4.3 1.75
Solyc10g074510.1.1 Tomato cytosol 0.54 1.64
Solyc10g074520.1.1 Tomato cytosol 1.61 0.99
Protein Annotations
EnsemblPlants:Solyc01g091290.2.1EnsemblPlantsGene:Solyc01g091290.2Gene3D:3.40.50.2060GO:GO:0006810GO:GO:0006904GO:GO:0008150
GO:GO:0009987GO:GO:0016192InterPro:Sec1-likeInterPro:Sec1-like_sfPANTHER:PTHR11679PANTHER:PTHR11679:SF59
PFAM:PF00995SUPFAM:SSF56815UniParc:UPI000276800FUniProt:K4AZ69MapMan:35.1:
Description
No Description!
Coordinates
chr1:+:84938529..84942701
Molecular Weight (calculated)
21739.2 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.259
Length
186 amino acids
Sequence
(BLAST)
001: MSFSDSETSS HGGEYKNFKQ ISRDRLLHEM LRTSDSGDSR SSWKVLIMDK VTVKVMSSTC KMADITDQGV SLVEDLFRRR QPLPTMDAIY YIQPSKENVV
101: MFLSDMSGRE PLYRKAYVYF SHPIPKDLVA RIKNDTSVIP RIGALGEMNF EYFPVDSQVI WQISMNTFFI YLEHLVQYLF INWELY
Best Arabidopsis Sequence Match ( AT1G12360.1 )
(BLAST)
001: MSYSDSDSSS HGGEYKNFRQ ITRERLLYEM LRSAKTGSSK STWKVLIMDK LTVKIMSYAC KMADITQEGV SLVEDIFRRR QPLPSMDAIY FIQPTKENVI
101: MFLSDMSGKS PLYKKAFVFF SSPVSKELVG HIKKDSSVLP RIGALREMNL EFFAIDSQGF ITDHERALED LFGDEETSRK GDACLNVMAS RIATVFASLR
201: EFPAVRYRAA KSLDASTMTT LRDLIPTKLA AGIWNCLAKH KQSIENFPQT ETCELLILDR SIDQIAPVIH EWTYDAMCHD LLNMEGNKYV HVIPSKSGGQ
301: PEKKDVLLEE HDPIWLELRH AHIADASERL HDKMTNFLSK NKAAQLQGKR DGAELSTRDL QKMVQALPQY SEQIDKLSLH VEIARKLNDL IREQGLRELG
401: QLEQDLVFGD AGMKDVIKYL STQEEASREG KLRLLMILAT IYPEKFEGEK GQNLMKLAKL SSDDMTAVNN MSLLGSAVDA KKNTPGGFTL KFDLHKKKRA
501: VRKERQEEAA WQLSRFYPMI EELIEKLSKG ELPKEDFPCM NDPSPSFHGS TSLSSAASSS QGQAAQSMRS RRTPTWAKPR GSDDGYSSDS VLRHASSDFR
601: KMGQRIFVFI VGGATRSELK VCHKLSTKLK REVILGSTSL DDPPQFITKL KLLTANDDLS LDDLQI
Arabidopsis Description
KEUSNARE-interacting protein KEULE [Source:UniProtKB/Swiss-Prot;Acc:Q9C5X3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.