Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032660.1-P | Field mustard | cytosol | 81.37 | 95.97 |
| CDY38041 | Canola | nucleus | 90.9 | 94.67 |
| VIT_15s0048g00970.t01 | Wine grape | cytosol | 64.72 | 73.62 |
| KRH65274 | Soybean | cytosol | 67.85 | 71.3 |
| VIT_15s0045g00060.t01 | Wine grape | cytosol | 46.23 | 71.27 |
| PGSC0003DMT400020076 | Potato | cytosol | 52.49 | 70.69 |
| KRH76261 | Soybean | nucleus | 67.28 | 70.6 |
| Solyc01g091300.2.1 | Tomato | nucleus | 51.64 | 69.14 |
| Solyc01g091290.2.1 | Tomato | cytosol, unclear | 18.21 | 68.82 |
| GSMUA_Achr9P24460_001 | Banana | cytosol | 63.3 | 67.12 |
| AT1G12360.1 | Thale cress | cytosol | 63.16 | 66.67 |
| Os06t0135900-01 | Rice | plasma membrane | 48.08 | 64.75 |
| KXG19223 | Sorghum | cytosol | 59.6 | 64.07 |
| TraesCS3D01G542100.1 | Wheat | cytosol | 57.89 | 61.95 |
| TraesCS3A01G538700.1 | Wheat | cytosol | 57.89 | 61.95 |
| TraesCS3B01G607200.1 | Wheat | cytosol | 57.89 | 61.95 |
| AT4G12120.1 | Thale cress | cytosol | 57.33 | 60.88 |
| Zm00001d045434_P004 | Maize | cytosol | 59.17 | 60.38 |
| HORVU3Hr1G117280.1 | Barley | cytosol | 58.04 | 60.18 |
| AT1G77140.1 | Thale cress | cytosol | 15.93 | 19.68 |
| AT2G17980.1 | Thale cress | mitochondrion | 16.36 | 18.34 |
| AT4G31740.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 3.98 | 16.37 |
Protein Annotations
| MapMan:13.4.2.4 | Gene3D:3.40.50.2060 | EntrezGene:839288 | UniProt:A0A1P8AMM7 | ProteinID:ANM57905.1 | ArrayExpress:AT1G02010 |
| EnsemblPlantsGene:AT1G02010 | RefSeq:AT1G02010 | TAIR:AT1G02010 | RefSeq:AT1G02010-TAIR-G | EnsemblPlants:AT1G02010.4 | Unigene:At.42623 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_001320383.1 | PFAM:PF00995 | PIRSF:PIRSF005715 | PANTHER:PTHR11679 |
| PANTHER:PTHR11679:SF59 | Symbol:SEC1A | SUPFAM:SSF56815 | InterPro:Sec1-like | InterPro:Sec1-like_sf | TMHMM:TMhelix |
| UniParc:UPI000848BF68 | SEG:seg | : | : | : | : |
Description
SEC1Asecretory 1A [Source:TAIR;Acc:AT1G02010]
Coordinates
chr1:+:347824..352503
Molecular Weight (calculated)
79729.6 Da
IEP (calculated)
8.087
GRAVY (calculated)
-0.391
Length
703 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFSDSESSS HGGGGGDYKF FRQISRDRLL HEMLGSTKTG DSKAWKILIM DRVTVKVMSQ SCKMADITDQ GISLVEELFK RREPMPGMDA IYFIQPSKEN
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREV FLFYAIIPSL FTYSFIAFWF LNFLLLSIQM NMEYFPIDNQ GFLTDHEQAL
201: ETLYAEDAEN SRHFHICLNI MATRIATVFA SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY
301: DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD
401: KLSTHVELAG KINRIIRDTG LRDLGQLEQD LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA
501: GSPENKAKSG SFSLKFDAGK TKQANRKDRS GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM
601: RSRRTATWAR PHSSDDGYSS DSVLKSASTE FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP
701: QYW
101: IVMFLSDMSG REPLYRKAFI FFSSTIPKEL VNHIKSDSSV LPRIGALREV FLFYAIIPSL FTYSFIAFWF LNFLLLSIQM NMEYFPIDNQ GFLTDHEQAL
201: ETLYAEDAEN SRHFHICLNI MATRIATVFA SLKELPFVRY RAAKSTASRD LVPSKLAAAI WDCISKYKAI PNFPQTETCE LLIVDRSVDQ IAPIIHEWTY
301: DAMCHDLLDM EGNKHVIEVP SKTGGPPEKK EIVLEDHDPV WLELRHTHIA DASERLHEKM TNFASKNKAA QMRSRDGSEL STRDLQKIVQ ALPQYGEQVD
401: KLSTHVELAG KINRIIRDTG LRDLGQLEQD LVFGDAGAKD VINFLRTNQD TNPENKLRLL MIYATVYPEK FEGDKGVKLM QLARLSPVDM KVISNMQLIA
501: GSPENKAKSG SFSLKFDAGK TKQANRKDRS GEEETWQLFR FYPMIEELLE KLVKGDLSKS DYLCMNQSSH KEESEARTGS VRKSSAPTAV PERKATPHSM
601: RSRRTATWAR PHSSDDGYSS DSVLKSASTE FKKLGQRIFV FIIGGATRSE LRVCHKLTSS LRREVVLGST SFDDPPQYIT KLKLLSEKDI QGAPAQPFKP
701: QYW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.