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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • extracellular 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, secretory
Any Predictor:cytosol, nucleus, secretory
BaCelLo:nucleus
MultiLoc:cytosol
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT2G17980.1 Thale cress mitochondrion 81.29 22.17
KRH58359 Soybean endoplasmic reticulum 75.44 20.74
KRH42240 Soybean endoplasmic reticulum, nucleus 73.68 20.26
Solyc01g112150.2.1 Tomato plastid 71.93 19.84
PGSC0003DMT400038058 Potato cytosol 71.93 19.84
VIT_03s0038g03110.t01 Wine grape cytosol 67.84 19.53
EES06083 Sorghum cytosol, endoplasmic reticulum, mitochondrion, plastid 66.67 18.21
GSMUA_Achr3P26940_001 Banana cytosol 60.23 18.2
TraesCS5D01G045800.1 Wheat plastid 65.5 18.06
TraesCS5B01G039900.1 Wheat cytosol, mitochondrion 65.5 18.06
TraesCS5A01G038500.1 Wheat cytosol, mitochondrion 65.5 18.01
Zm00001d051824_P001 Maize plasma membrane 65.5 17.83
HORVU5Hr1G009740.2 Barley cytosol, mitochondrion 65.5 17.47
OQU91892 Sorghum cytosol, mitochondrion 63.74 17.47
Os03t0620800-01 Rice plasma membrane 62.57 17.18
Zm00001d030527_P001 Maize cytosol, mitochondrion 61.99 17.07
Zm00001d005839_P001 Maize cytosol, golgi, plastid 36.26 12.73
AT1G77140.1 Thale cress cytosol 16.96 5.1
AT1G12360.1 Thale cress cytosol 17.54 4.5
CDY48989 Canola cytosol 7.6 4.22
Bra032934.1-P Field mustard cytosol 7.6 4.18
AT4G12120.1 Thale cress cytosol 15.79 4.08
AT1G02010.4 Thale cress cytosol, nucleus, peroxisome 16.37 3.98
PGSC0003DMT400043339 Potato cytosol 0.0 0.0
Protein Annotations
Gene3D:3.40.50.1910MapMan:35.1EntrezGene:829302ProteinID:AEE85952.1ArrayExpress:AT4G31740EnsemblPlantsGene:AT4G31740
RefSeq:AT4G31740TAIR:AT4G31740RefSeq:AT4G31740-TAIR-GEnsemblPlants:AT4G31740.1TAIR:AT4G31740.1ProteinID:CAA19749.1
ProteinID:CAB79892.1GO:GO:0006810GO:GO:0006904GO:GO:0008150GO:GO:0009987GO:GO:0016192
InterPro:IPR027482RefSeq:NP_194902.1UniProt:O81774PFAM:PF00995PANTHER:PTHR11679PANTHER:PTHR11679:SF60
SUPFAM:SSF56815InterPro:Sec-1-like_dom2InterPro:Sec1-likeInterPro:Sec1-like_sfUniParc:UPI00000A8455:
Description
Sec1/munc18-like (SM) proteins superfamily [Source:UniProtKB/TrEMBL;Acc:O81774]
Coordinates
chr4:+:15363778..15364349
Molecular Weight (calculated)
18626.1 Da
IEP (calculated)
4.124
GRAVY (calculated)
-0.158
Length
171 amino acids
Sequence
(BLAST)
001: MDKLRFAIMY LLSLETINQS EVEAVEAALP SADSASRSNI VDWAEKLYGQ SISAVTPGVK NLLSSDQQLP VARTVEALTD GKPNPETDSY LILDARASKS
101: GSIDNSYVKG PFEEAIVFMI GGGNYIEYSS LQELSQRQEM VNNIIYGATE ILTGTELVEQ LGELGQKMGL R
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.