Factsheet for PGSC0003DMT400038058

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g112150.2.1	Tomato	plastid	98.39	98.39
PGSC0003DMT400043339	Potato	cytosol	48.87	92.38
VIT_03s0038g03110.t01	Wine grape	cytosol	83.71	87.37
KRH58359	Soybean	endoplasmic reticulum	85.0	84.73
KRH42240	Soybean	endoplasmic reticulum, nucleus	84.68	84.41
CDY29213	Canola	cytosol	77.58	79.9
CDY63506	Canola	cytosol	77.26	79.57
AT2G17980.1	Thale cress	mitochondrion	80.0	79.11
Bra024484.1-P	Field mustard	cytosol	80.97	78.81
GSMUA_Achr3P26940_001	Banana	cytosol	66.13	72.44
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.84	71.93
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	66.94	66.29
TraesCS5D01G045800.1	Wheat	plastid	66.29	66.29
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	66.29	66.29
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	66.13	65.92
Zm00001d051824_P001	Maize	plasma membrane	66.29	65.45
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	66.13	63.96
OQU91892	Sorghum	cytosol, mitochondrion	63.23	62.82
Os03t0620800-01	Rice	plasma membrane	62.42	62.12
Zm00001d030527_P001	Maize	cytosol, mitochondrion	62.1	62.0
CDY48989	Canola	cytosol	29.52	59.42
Bra032934.1-P	Field mustard	cytosol	29.52	58.84
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	41.94	53.39
PGSC0003DMT400020076	Potato	cytosol	14.19	16.86

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:102600457	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1
ncoils:Coil	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192
InterPro:IPR027482	UniProt:M1B694	PFAM:PF00995	EnsemblPlantsGene:PGSC0003DMG400014674	PGSC:PGSC0003DMG400014674	EnsemblPlants:PGSC0003DMT400038058
PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI000294E5E1	RefSeq:XP_006364363.1	SEG:seg	:	:

Description

ATSLY1 [Source:PGSC_GENE;Acc:PGSC0003DMG400014674]

Coordinates

chr1:-:88296380..88299206

Molecular Weight (calculated)

69176.0 Da

IEP (calculated)

6.253

GRAVY (calculated)

-0.207

Length

620 amino acids

Sequence
(BLAST)

001: MALNLRQKQT ECITRMLNLN QPVNAGATAN EEVYKILIYD RFCQDILSPL IHVKDLRKHG VTLYFLIDKD RKPVHDVPAV YFVQPTHLNV QRIVADASKS
101: LYDSFHLNFS SSIPRPLLED LASGTINSDS IERISKVHDQ YLEFVTLEDN LFSLAYKNCY LQLNDPSAGD KEIEEIIEKI VSGLFCVLAT LAVVPIIRCP
201: RGGPAEMVAS LLDQRLRDHL LAKNNLFSEA GNFTSSFQRP ILCLFDRNFE LSVAIQHDFR YRPLVHDVLG LRLNRLSVQG EKSGMKSFEL DRSDPFWVAN
301: WSLEFPEVAL EIEAQLNKYK KDVEEVNKRT GGNSGAEFDG TDLVGNTKHL MNAVNSLPEL TERKQVIDKH TNIATALLGE IKERSLDSYA KKENDMMVRG
401: VIDRSELIGA LKGKGTKVDK LRFAIMYLIS TESLPQSEVE MIETALRESE VDTTAFQYVK KIKSLNVSLA SANSASRSNI VDWAEKLYGQ SISAVTAGVK
501: NLLSSDHQLA LSRTVEALME GKPNPEIDSY IIFDPRAPKS SSGMSSSHLK GPFKEAIVFM IGGGNYVEYG SLQELANRQQ PVKHVIYGTT EILTGGEFIE
601: QLALLGQKMG LGTSVTTPAH

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.