Factsheet for TraesCS5D01G045800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	99.84	99.84
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	99.84	99.52
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	98.87	95.63
Os03t0620800-01	Rice	plasma membrane	86.77	86.36
OQU91892	Sorghum	cytosol, mitochondrion	85.97	85.42
Zm00001d030527_P001	Maize	cytosol, mitochondrion	85.16	85.02
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	56.13	71.46
GSMUA_Achr3P26940_001	Banana	cytosol	62.58	68.55
CDY52164	Canola	cytosol	5.81	66.67
Solyc01g112150.2.1	Tomato	plastid	66.45	66.45
PGSC0003DMT400038058	Potato	cytosol	66.29	66.29
VIT_03s0038g03110.t01	Wine grape	cytosol	63.23	65.99
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.06	65.5
KRH42240	Soybean	endoplasmic reticulum, nucleus	65.32	65.11
KRH58359	Soybean	endoplasmic reticulum	65.32	65.11
CDY63506	Canola	cytosol	61.61	63.46
AT2G17980.1	Thale cress	mitochondrion	64.03	63.32
CDY29213	Canola	cytosol	61.45	63.29
Bra024484.1-P	Field mustard	cytosol	63.71	62.01
PGSC0003DMT400043339	Potato	cytosol	31.94	60.37
CDY52165	Canola	cytosol	32.42	55.83
CDY39875	Canola	cytosol	28.71	54.43
Bra032934.1-P	Field mustard	cytosol	26.13	52.09
CDY48989	Canola	cytosol	25.81	51.95
TraesCS2D01G259600.1	Wheat	cytosol	18.39	20.11
TraesCS6D01G179600.1	Wheat	nucleus	20.16	18.88
TraesCS2D01G060000.1	Wheat	nucleus	18.87	17.54
TraesCS3D01G542100.1	Wheat	cytosol	18.23	17.2

Protein Annotations

EnsemblPlants:TraesCS5D01G045800.1	EnsemblPlantsGene:TraesCS5D01G045800	Gene3D:1.25.40.60	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10
GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	ncoils:Coil	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60
PFAM:PF00995	PIRSF:PIRSF005715	SEG:seg	SUPFAM:SSF56815	MapMan:35.1	:

Description

No Description!

Coordinates

chr5D:+:45018530..45020485

Molecular Weight (calculated)

67546.6 Da

IEP (calculated)

5.980

GRAVY (calculated)

-0.172

Length

620 amino acids

Sequence
(BLAST)

001: MALSLRKKQL DLITRMLHLN QQQPSPDGGG GEGDEEAYKI LVMDGPCISL LSPVLRVGDL RKHGVTLHLN IDKARQQVAD APAVYLVRPT PANADRIAAD
101: AAAGLYASFH VNFSTSVPRP VLDRLAAATA ASRSAHRVAR VADQYLDFVC LEDGLFSLAQ PRAYVALNDP AAADSDITSL VEAVALGLFC VVATLGAVPI
201: IRCARGGPAE MVAAALDARL RDHLLAKPNL FTEAASSAAS SFQRPVLCLF DRNFELSVGI QHDWSYRPLV HDVLSFKLNK LKLPTEKYDL DDSDPFWVAN
301: SWSPFPKVAE EIEAQLAKYK QDVDEVNQRT GGGRDGVEFD GTDLIGNTKH LMNAVNSLPE LTERKKMIDK HTNIATALLG HIKERSLDGY YECENDMLVN
401: GTVDRNMLLS LLRGKGTKED KLRLAVTYLL SFEAPPASEL EQVEAALRES EVDMSAFQYV KRIKSLNTQF AAASSTASRS NIVDWAEKLY GQSISAVTAG
501: VKNLLSDGRQ LALTRTVEAL MEGKPNPEVD NYLLFDPRAP RSGTGGQFRG PFREAIVFMI GGGNYIEYRS LVELGQRSQP SKHVIYGATE ILNGVEFIQQ
601: LAELGQKAGL GGGSSNLPPQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.