CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42240	Soybean	endoplasmic reticulum, nucleus	98.07	98.07
VIT_03s0038g03110.t01	Wine grape	cytosol	82.64	86.53
PGSC0003DMT400038058	Potato	cytosol	84.73	85.0
PGSC0003DMT400043339	Potato	cytosol	44.53	84.45
Solyc01g112150.2.1	Tomato	plastid	84.08	84.35
CDY63506	Canola	cytosol	76.85	79.4
CDY29213	Canola	cytosol	76.69	79.24
Bra024484.1-P	Field mustard	cytosol	80.06	78.18
AT2G17980.1	Thale cress	mitochondrion	77.97	77.35
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	20.74	75.44
GSMUA_Achr3P26940_001	Banana	cytosol	64.15	70.49
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	67.68	67.25
Zm00001d051824_P001	Maize	plasma membrane	66.4	65.76
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	65.11	65.32
TraesCS5D01G045800.1	Wheat	plastid	65.11	65.32
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	65.11	65.11
OQU91892	Sorghum	cytosol, mitochondrion	63.99	63.78
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	65.11	63.18
Zm00001d030527_P001	Maize	cytosol, mitochondrion	62.54	62.64
Os03t0620800-01	Rice	plasma membrane	62.7	62.6
CDY48989	Canola	cytosol	29.74	60.06
Bra032934.1-P	Field mustard	cytosol	29.74	59.49
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	42.44	54.21
KRH53395	Soybean	cytosol	18.33	20.07
KRH64544	Soybean	endoplasmic reticulum	18.17	19.89
KRH76261	Soybean	nucleus	19.61	18.21
KRH65274	Soybean	cytosol	19.29	17.94
KRH57307	Soybean	cytosol, nucleus	19.13	17.89
KRH28021	Soybean	nucleus	18.81	17.65
KRH04038	Soybean	cytosol	18.81	17.57
KRH77416	Soybean	cytosol	18.65	17.08

Protein Annotations

Gene3D:1.25.40.60	EntrezGene:100818953	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1
EMBL:ACUP02003254	ncoils:Coil	EnsemblPlantsGene:GLYMA_05G122800	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150
GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	UniProt:K7KPU4	EnsemblPlants:KRH58359	ProteinID:KRH58359
ProteinID:KRH58359.1	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI000233A6E9	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:-:31643676..31646323

Molecular Weight (calculated)

68844.4 Da

IEP (calculated)

6.465

GRAVY (calculated)

-0.239

Length

622 amino acids

Sequence
(BLAST)

001: MSLNLRQKQT ECIARMLNLN QPLNAAGTAN EEVYKILIYD KFCQNILSPL IHVKDLRKHG VTLYFLIDKD RKPVHDVPAV YFVQPNQPNV QRIVSDASKS
101: LYQSLHLNFS TSIPRPLLED LATGTLNSDS IQRVSKVHDQ YLEFVTLEDN LFSLAHKPCY VQLNDPSAGD KEIEELVDKI VGGLFCVLAT LAVVPVIRCP
201: RGGPAEMVAS ALDQRIRDHL LSKNNLFTEG GNFVSSFQRP VLCIFDRNFE LPVAIQHDFR YRPLVHDVLG LKLNRLSVQG EKGGMRSYEL DSADSFWVAN
301: GSLEFPEVAV EIETQLNKYK KDVDEVNKRT GGTHGAEFDG TDLIGNTKHL MNAVNSLPEL TERKQVIDKH TNIATVLLGE IKERSLDSYA KKENDMMVRG
401: GIERADLLGV LKGKGTKMDK LRFAIIYLIS SETINQSEVE AVEAALRESE VDTAAFQYVK KIKSLNVSLA SANSASRSNI VDWAEKLYGQ SISAVTAGVK
501: NLLSNDRQLA LARTVEALIE GRPNPETDSY LSFDPRAPKS GSGASSSHMK GPFKEAIVFM IGGGNYVEYC SLQELAQHQQ PAKHIIYGTT EMLTGVDFVE
601: QLTLLGQKMG LGNVGSSSTP AQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.