CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030527_P001	Maize	cytosol, mitochondrion	93.91	94.36
TraesCS5D01G045800.1	Wheat	plastid	85.42	85.97
TraesCS5B01G039900.1	Wheat	cytosol, mitochondrion	85.26	85.81
TraesCS5A01G038500.1	Wheat	cytosol, mitochondrion	85.26	85.53
HORVU5Hr1G009740.2	Barley	cytosol, mitochondrion	85.26	83.0
Os03t0620800-01	Rice	plasma membrane	80.13	80.26
EES06083	Sorghum	cytosol, endoplasmic reticulum, mitochondrion, plastid	79.49	79.23
Zm00001d005839_P001	Maize	cytosol, golgi, plastid	58.81	75.36
GSMUA_Achr3P26940_001	Banana	cytosol	60.1	66.25
CDY52164	Canola	cytosol	5.61	64.81
KRH58359	Soybean	endoplasmic reticulum	63.78	63.99
AT4G31740.1	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	17.47	63.74
KRH42240	Soybean	endoplasmic reticulum, nucleus	63.46	63.67
Solyc01g112150.2.1	Tomato	plastid	62.98	63.39
PGSC0003DMT400038058	Potato	cytosol	62.82	63.23
VIT_03s0038g03110.t01	Wine grape	cytosol	59.94	62.96
CDY63506	Canola	cytosol	59.78	61.96
CDY29213	Canola	cytosol	59.62	61.79
AT2G17980.1	Thale cress	mitochondrion	61.06	60.77
Bra024484.1-P	Field mustard	cytosol	61.54	60.28
PGSC0003DMT400043339	Potato	cytosol	29.81	56.71
CDY52165	Canola	cytosol	30.93	53.61
CDY39875	Canola	cytosol	26.92	51.38
CDY48989	Canola	cytosol	25.16	50.97
Bra032934.1-P	Field mustard	cytosol	25.32	50.8
EES13788	Sorghum	cytosol	18.91	20.81
OQU84878	Sorghum	nucleus	19.39	18.31
KXG25933	Sorghum	cytosol, plastid	19.55	18.29
KXG19223	Sorghum	cytosol	17.31	16.51

Protein Annotations

Gene3D:1.25.40.60	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	MapMan:35.1	EntrezGene:8155274
UniProt:C6JRS7	ncoils:Coil	ProteinID:EES20241.1	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150
GO:GO:0009987	GO:GO:0016192	InterPro:IPR027482	ProteinID:KXG18955.1	ProteinID:KXG18956.1	ProteinID:KXG18957.1
EnsemblPlants:OQU91892	ProteinID:OQU91892	ProteinID:OQU91892.1	ProteinID:OQU91893.1	PFAM:PF00995	PIRSF:PIRSF005715
PANTHER:PTHR11679	PANTHER:PTHR11679:SF60	EnsemblPlantsGene:SORBI_3001G261456	SUPFAM:SSF56815	InterPro:Sec-1-like_dom2	InterPro:Sec1-like
InterPro:Sec1-like_sf	UniParc:UPI0001AFF801	RefSeq:XP_002489236.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:-:34533785..34537801

Molecular Weight (calculated)

67716.1 Da

IEP (calculated)

5.915

GRAVY (calculated)

-0.094

Length

624 amino acids

Sequence
(BLAST)

001: MTLSLRRKQL DVIVRMLHLS QQQLSNAGEG QGEDDAYKIL VMDQPCISVL SPVLKLGDLR HHGVTLTLNI DRPRQAVPDA PAVYFVRPTP GNVDRLAADA
101: AAGLYGSFHV NFSTSVPRSL LERLATACAA APPACAGRVA RVADQYIDFV CLEDGLFSLA QPRAYVALND PAAADTDITA LVDAVALGLF CVVVTLGVVP
201: VIRCARGGPA EMVAGALDAR LRDHLLAKPN LFTEAASAAV ASFQRPVLCL FDRNFELSVG VQHDWSYRPL VHDVLGLKQN ILKLPAEKYE LDDSDKFWVA
301: NSWSPFPKVA EEIEAQLAKY KQDVDEVNHR TGGGKVGAEF DGTDLIGNTK HLMNAVNSLP ELTERKKMID KHTNIATSLL GHIKERSLDG YCDCENDMLV
401: NGTVDRNTLL SLLRGKGTKE DKLRLAVTYL LSFETPPSSE LEQVEATLRE SEVDMCAFQY VKRIKALNTQ FAAASGTATK SNIVDWAEKL YGQSISAVTA
501: GVKNLLSDGR QLALTRTVEA LMEGKPNPEV DDYLLFDPRA PRSGTGGQFK GPFREAVVFM IGGGNYIEYK SLMELVQHSQ PSKHVIYGAT EILSGSEFIH
601: QLAELGQKAG LGGGSSNIPL GSAQ

Best Arabidopsis Sequence Match ( AT2G17980.1 )
(BLAST)

001: MALNLRQKQT ECVIRMLNLN QPLNPSGTAN EEVYKILIYD RFCQNILSPL THVKDLRKHG VTLFFLIDKD RQPVHDVPAV YFVQPTESNL QRIIADASRS
101: LYDTFHLNFS SSIPRKFLEE LASGTLKSGS VEKVSKVHDQ YLEFVTLEDN LFSLAQQSTY VQMNDPSAGE KEINEIIERV ASGLFCVLVT LGVVPVIRCP
201: SGGPAEMVAS LLDQKLRDHL LSKNNLFTEG GGFMSSFQRP LLCIFDRNFE LSVGIQHDFR YRPLVHDVLG LKLNQLKVQG EKGPPKSFEL DSSDPFWSAN
301: STLEFPDVAV EIETQLNKYK RDVEEVNKKT GGGSGAEFDG TDLIGNIHTE HLMNTVKSLP ELTERKKVID KHTNIATALL GQIKERSIDA FTKKESDMMM
401: RGGIDRTELM AALKGKGTKM DKLRFAIMYL ISTETINQSE VEAVEAALNE AEADTSAFQY VKKIKSLNAS FAATSANSAS RSNIVDWAEK LYGQSISAVT
501: AGVKNLLSSD QQLAVTRTVE ALTEGKPNPE IDSYRFLDPR APKSSSSGGS HVKGPFREAI VFMIGGGNYV EYGSLQELTQ RQLTVKNVIY GATEILNGGE
601: LVEQLGLLGK KMGLGGPVAS TSLSGGH

Arabidopsis Description

SLY1SEC1 family transport protein SLY1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL48]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.