Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY49318 | Canola | plastid | 16.67 | 7.38 |
| CDY39875 | Canola | cytosol | 37.04 | 6.12 |
| GSMUA_Achr3P26940_001 | Banana | cytosol | 62.96 | 6.01 |
| CDY63506 | Canola | cytosol | 66.67 | 5.98 |
| CDY29213 | Canola | cytosol | 64.81 | 5.81 |
| TraesCS5B01G039900.1 | Wheat | cytosol, mitochondrion | 66.67 | 5.81 |
| TraesCS5D01G045800.1 | Wheat | plastid | 66.67 | 5.81 |
| TraesCS5A01G038500.1 | Wheat | cytosol, mitochondrion | 66.67 | 5.79 |
| Zm00001d030527_P001 | Maize | cytosol, mitochondrion | 64.81 | 5.64 |
| Os03t0620800-01 | Rice | plasma membrane | 64.81 | 5.62 |
| HORVU5Hr1G009740.2 | Barley | cytosol, mitochondrion | 66.67 | 5.62 |
| OQU91892 | Sorghum | cytosol, mitochondrion | 64.81 | 5.61 |
| EES06083 | Sorghum | cytosol, endoplasmic reticulum, mitochondrion, plastid | 64.81 | 5.59 |
| Zm00001d051824_P001 | Maize | plasma membrane | 64.81 | 5.57 |
| CDX79189 | Canola | cytosol | 25.93 | 5.09 |
| CDY38360 | Canola | cytosol | 24.07 | 2.28 |
| CDY13575 | Canola | cytosol | 24.07 | 2.27 |
| CDX98070 | Canola | cytosol | 22.22 | 1.8 |
| CDY26559 | Canola | cytosol | 22.22 | 1.8 |
| CDY15993 | Canola | cytosol | 22.22 | 1.8 |
| CDY30074 | Canola | cytosol | 22.22 | 1.8 |
| CDY38041 | Canola | nucleus | 18.52 | 1.48 |
| Zm00001d005839_P001 | Maize | cytosol, golgi, plastid | 12.96 | 1.44 |
| CDY68111 | Canola | cytosol | 16.67 | 1.35 |
| CDX90817 | Canola | cytosol | 16.67 | 1.35 |
| CDX86721 | Canola | cytosol | 14.81 | 1.21 |
| CDX94488 | Canola | cytosol | 14.81 | 1.2 |
| CDX79222 | Canola | cytosol, mitochondrion | 1.85 | 0.37 |
| CDY52165 | Canola | cytosol | 1.85 | 0.28 |
| CDY48989 | Canola | cytosol | 0.0 | 0.0 |
| CDY71507 | Canola | cytosol, golgi | 0.0 | 0.0 |
| CDY70457 | Canola | cytosol | 0.0 | 0.0 |
| CDY26558 | Canola | cytosol | 0.0 | 0.0 |
| CDX79223 | Canola | cytosol, plastid | 0.0 | 0.0 |
| CDX79215 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY52164 | EnsemblPlantsGene:GSBRNA2T00005003001 | Gene3D:3.40.50.1910 | GO:A0A078IRT7 | GO:GO:0006810 | GO:GO:0006904 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016192 | InterPro:IPR027482 | InterPro:Sec-1-like_dom2 | InterPro:Sec1-like |
| InterPro:Sec1-like_sf | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF60 | PFAM:PF00995 | ProteinID:CDY52164 | ProteinID:CDY52164.1 |
| SUPFAM:SSF56815 | UniParc:UPI0004EB657E | UniProt:A0A078IRT7 | MapMan:35.2 | : | : |
Description
BnaC02g48040DBnaC02g48040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IRT7]
Coordinates
chrLK033061:-:24239..24403
Molecular Weight (calculated)
5797.1 Da
IEP (calculated)
4.189
GRAVY (calculated)
0.015
Length
54 amino acids
Sequence
(BLAST)
(BLAST)
1: MVGGGNYIEY SSLQELSQQP QGTLKNIIYG ATEILNATQL IEQLAILGQK MGLG
001: MDKLRFAIMY LLSLETINQS EVEAVEAALP SADSASRSNI VDWAEKLYGQ SISAVTPGVK NLLSSDQQLP VARTVEALTD GKPNPETDSY LILDARASKS
101: GSIDNSYVKG PFEEAIVFMI GGGNYIEYSS LQELSQRQEM VNNIIYGATE ILTGTELVEQ LGELGQKMGL R
101: GSIDNSYVKG PFEEAIVFMI GGGNYIEYSS LQELSQRQEM VNNIIYGATE ILTGTELVEQ LGELGQKMGL R
Arabidopsis Description
Sec1/munc18-like (SM) proteins superfamily [Source:UniProtKB/TrEMBL;Acc:O81774]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.