CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67539
CDX73599
CDX74445
CDX74451
CDX78128
CDX95233
CDX97432
CDY13344
CDY22037
CDY30250
CDY37005
CDY52786

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	CDX67539	AT3G52850.1	10888666
AT1G77140.1	CDX73599	AT3G52850.1	10888666
AT1G77140.1	CDX78128	AT3G52850.1	10888666
AT1G77140.1	CDY13344	AT3G52850.1	10888666
AT1G77140.1	CDX97432	AT4G02195.1	10888666
AT1G77140.1	CDY22037	AT4G02195.1	10888666
AT1G77140.1	CDY52786	AT4G02195.1	10888666
AT1G77140.1	CDX74445	AT5G39510.1	10888666
AT1G77140.1	CDX74451	AT5G39510.1	10888666
AT1G77140.1	CDX95233	AT5G39510.1	10888666
AT1G77140.1	CDY30250	AT5G39510.1	10888666
AT1G77140.1	CDY37005	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79189	Canola	cytosol	37.27	36.73
CDX79215	Canola	cytosol	47.97	31.4
CDY38360	Canola	cytosol	56.09	26.71
CDY70457	Canola	cytosol	35.06	26.54
CDY13575	Canola	cytosol	56.09	26.53
AT1G77140.1	Thale cress	cytosol	55.35	26.36
VIT_18s0001g15600.t01	Wine grape	cytosol	51.29	24.47
Solyc04g064820.2.1	Tomato	cytosol, nucleus	50.55	24.12
KRH64544	Soybean	endoplasmic reticulum	49.45	23.59
KRH53395	Soybean	cytosol	49.45	23.59
GSMUA_Achr10P...	Banana	cytosol	48.34	23.19
TraesCS2D01G259600.1	Wheat	cytosol	44.65	21.34
TraesCS2B01G277800.2	Wheat	cytosol	44.65	21.34
TraesCS2A01G264300.1	Wheat	cytosol	44.65	21.34
Os02t0437800-02	Rice	cytosol, plasma membrane	43.54	20.81
EES13788	Sorghum	cytosol	42.8	20.46
HORVU2Hr1G062800.7	Barley	cytosol, plastid	44.28	19.11
Zm00001d049522_P001	Maize	cytosol, plasma membrane	43.54	18.64
CDY71507	Canola	cytosol, golgi	20.3	18.52
CDY48989	Canola	cytosol	10.33	9.09
CDX98070	Canola	cytosol	17.71	7.22
CDY26559	Canola	cytosol	17.71	7.21
CDY15993	Canola	cytosol	17.71	7.2
CDX86721	Canola	cytosol	17.34	7.13
CDY30074	Canola	cytosol	17.34	7.04
CDY26558	Canola	cytosol	4.06	6.92
CDY38041	Canola	nucleus	16.24	6.52
CDX94488	Canola	cytosol	15.87	6.47
CDY68111	Canola	cytosol	15.87	6.43
CDY52165	Canola	cytosol	8.49	6.39
CDX90817	Canola	cytosol	15.5	6.28
CDY29213	Canola	cytosol	12.55	5.65
CDY63506	Canola	cytosol	12.55	5.65
CDY39875	Canola	cytosol	6.64	5.5
CDY49318	Canola	plastid	1.48	3.28
CDX79223	Canola	cytosol, plastid	0.74	3.03
CDY52164	Canola	cytosol	0.37	1.85

Protein Annotations

EnsemblPlants:CDX79222	EnsemblPlantsGene:GSBRNA2T00131822001	Gene3D:3.90.830.10	GO:A0A078CR64	GO:GO:0006810	GO:GO:0006904
GO:GO:0008150	GO:GO:0009987	GO:GO:0016192	InterPro:Sec1-like	InterPro:Sec1-like_sf	PANTHER:PTHR11679
PANTHER:PTHR11679:SF3	PFAM:PF00995	ProteinID:CDX79222	ProteinID:CDX79222.1	SUPFAM:SSF56815	UniParc:UPI0004EE531B
MapMan:35.1	:	:	:	:	:

Description

BnaC06g20810D

Coordinates

chrLK031817:-:431369..435225

Molecular Weight (calculated)

31108.5 Da

IEP (calculated)

6.256

GRAVY (calculated)

-0.270

Length

271 amino acids

Sequence
(BLAST)

001: MASRSPKYKP GVMSNLAPFK ASLTSVAKVH QKDLVCEIVP ETDIVKQTVT VEVNLTEESP FRNEDVSAYH ETEETNPYVE EVSMSSGDCL AMAHELIGLE
101: DNKVDLRAIG SLPKDQQVVI ILQWFSHQKQ DAFFKSNINQ NIQTVEDMAR FVDNYPEYKK MQGNVSKHVT LITEMSKLLE ARKLMLAVTD LLNNESVSDI
201: DRLRLVMLYA LRFEKENPVQ LRQLFNKLAS RSPKYKPGAM SNLAPFSLNC ISFLYLWNIL LHFLQRWYND L

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.