Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79189 | Canola | cytosol | 47.45 | 98.18 |
| Bra008294.1-P | Field mustard | cytosol | 95.96 | 95.96 |
| CDY38360 | Canola | cytosol | 95.78 | 95.78 |
| CDY70457 | Canola | cytosol | 59.75 | 94.97 |
| CDX79215 | Canola | cytosol | 64.67 | 88.89 |
| VIT_18s0001g15600.t01 | Wine grape | cytosol | 85.94 | 86.09 |
| Solyc04g064820.2.1 | Tomato | cytosol, nucleus | 85.41 | 85.56 |
| CDY13575 | Canola | cytosol | 85.94 | 85.34 |
| KRH64544 | Soybean | endoplasmic reticulum | 84.18 | 84.33 |
| KRH53395 | Soybean | cytosol | 84.01 | 84.15 |
| GSMUA_Achr10P... | Banana | cytosol | 81.02 | 81.59 |
| TraesCS2A01G264300.1 | Wheat | cytosol | 76.45 | 76.72 |
| TraesCS2B01G277800.2 | Wheat | cytosol | 76.45 | 76.72 |
| TraesCS2D01G259600.1 | Wheat | cytosol | 76.45 | 76.72 |
| Os02t0437800-02 | Rice | cytosol, plasma membrane | 76.1 | 76.37 |
| EES13788 | Sorghum | cytosol | 75.92 | 76.19 |
| HORVU2Hr1G062800.7 | Barley | cytosol, plastid | 76.27 | 69.11 |
| Zm00001d049522_P001 | Maize | cytosol, plasma membrane | 76.63 | 68.88 |
| CDX79222 | Canola | cytosol, mitochondrion | 26.36 | 55.35 |
| AT4G12120.1 | Thale cress | cytosol | 21.62 | 18.58 |
| AT2G17980.1 | Thale cress | mitochondrion | 20.04 | 18.18 |
| AT1G12360.1 | Thale cress | cytosol | 20.74 | 17.72 |
| AT4G31740.1 | Thale cress | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 5.1 | 16.96 |
| AT1G02010.4 | Thale cress | cytosol, nucleus, peroxisome | 19.68 | 15.93 |
Protein Annotations
| Gene3D:1.25.40.60 | MapMan:22.7.7.1 | Gene3D:3.40.50.1910 | Gene3D:3.40.50.2060 | Gene3D:3.90.830.10 | EntrezGene:844050 |
| UniProt:A0A178WPE4 | ProteinID:AAC34344.1 | ProteinID:AEE35940.1 | EMBL:AF036234 | ArrayExpress:AT1G77140 | EnsemblPlantsGene:AT1G77140 |
| RefSeq:AT1G77140 | TAIR:AT1G77140 | RefSeq:AT1G77140-TAIR-G | EnsemblPlants:AT1G77140.1 | TAIR:AT1G77140.1 | EMBL:AY050370 |
| EMBL:AY101517 | Unigene:At.10764 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005794 | GO:GO:0005802 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006904 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016192 | InterPro:IPR027482 | RefSeq:NP_565150.1 | UniProt:O49048 |
| ProteinID:OAP19002.1 | PFAM:PF00995 | PIRSF:PIRSF005715 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR11679 | PANTHER:PTHR11679:SF3 |
| SUPFAM:SSF56815 | InterPro:Sec-1-like_dom2 | InterPro:Sec1-like | InterPro:Sec1-like_sf | UniParc:UPI0000138C2B | Symbol:VPS45 |
| SEG:seg | : | : | : | : | : |
Description
VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
Coordinates
chr1:+:28983934..28988035
Molecular Weight (calculated)
64946.0 Da
IEP (calculated)
6.664
GRAVY (calculated)
-0.308
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.