Factsheet for Bra008294.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006952.1-P
Bra025661.1-P
Bra028535.1-P
Bra036287.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G77140.1	Bra006952.1-P	AT3G52850.1	10888666
AT1G77140.1	Bra028535.1-P	AT3G52850.1	10888666
AT1G77140.1	Bra036287.1-P	AT4G02195.1	10888666
AT1G77140.1	Bra025661.1-P	AT5G39510.1	10888666
AT1G77140.1	Bra040987.1-P	AT5G39510.1	10888666

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38360	Canola	cytosol	99.82	99.82
CDY70457	Canola	cytosol	62.74	99.72
AT1G77140.1	Thale cress	cytosol	95.96	95.96
CDY13575	Canola	cytosol	88.58	87.96
VIT_18s0001g15600.t01	Wine grape	cytosol	86.29	86.44
Solyc04g064820.2.1	Tomato	cytosol, nucleus	85.59	85.74
KRH64544	Soybean	endoplasmic reticulum	84.01	84.15
KRH53395	Soybean	cytosol	83.48	83.63
GSMUA_Achr10P...	Banana	cytosol	81.37	81.95
Os02t0437800-02	Rice	cytosol, plasma membrane	76.8	77.07
TraesCS2D01G259600.1	Wheat	cytosol	76.45	76.72
TraesCS2B01G277800.2	Wheat	cytosol	76.45	76.72
TraesCS2A01G264300.1	Wheat	cytosol	76.45	76.72
EES13788	Sorghum	cytosol	76.45	76.72
Zm00001d049522_P001	Maize	cytosol, plasma membrane	77.15	69.35
HORVU2Hr1G062800.7	Barley	cytosol, plastid	76.27	69.11
Bra029438.1-P	Field mustard	cytosol	21.97	18.97
Bra019760.1-P	Field mustard	cytosol	21.09	18.81
Bra026974.1-P	Field mustard	cytosol	21.62	18.47
Bra000761.1-P	Field mustard	cytosol	21.62	18.14
Bra024484.1-P	Field mustard	cytosol	19.68	17.58
Bra032934.1-P	Field mustard	cytosol	9.49	17.36
Bra032660.1-P	Field mustard	cytosol	17.4	16.61
Bra038812.1-P	Field mustard	plastid	2.81	12.5

Protein Annotations

Gene3D:1.25.40.60	MapMan:22.7.7.1	Gene3D:3.40.50.1910	Gene3D:3.40.50.2060	Gene3D:3.90.830.10	EnsemblPlantsGene:Bra008294
EnsemblPlants:Bra008294.1	EnsemblPlants:Bra008294.1-P	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005794	GO:GO:0005802	GO:GO:0006810	GO:GO:0006886	GO:GO:0006904
GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0016020	GO:GO:0016192	InterPro:IPR027482
UniProt:M4CVP7	PFAM:PF00995	PIRSF:PIRSF005715	PANTHER:PTHR11679	PANTHER:PTHR11679:SF3	SUPFAM:SSF56815
InterPro:Sec-1-like_dom2	InterPro:Sec1-like	InterPro:Sec1-like_sf	UniParc:UPI0002546100	SEG:seg	:

Description

AT1G77140 (E=4e-308) VPS45, ATVPS45 | VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter

Coordinates

chrA02:+:14533462..14536531

Molecular Weight (calculated)

64875.9 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.298

Length

569 amino acids

Sequence
(BLAST)

001: MALVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISAS NESMSHLKAV YFVRPTSENV QKLRHQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEFYADF VAGDPYHFTL NMAANHLYML PAVVDPSGLQ RYSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAQETA
201: KLMYQQESGL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLRA IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMLVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKQGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRCVALQN STNSGIRFIL GGTAVLNSKR FLMDLEEAQR ISRSGSHMV

Best Arabidopsis Sequence Match ( AT1G77140.1 )
(BLAST)

001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV

Arabidopsis Description

VPS45VPS45 [Source:UniProtKB/TrEMBL;Acc:A0A178WPE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.