Factsheet for Bra040987.1-P

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006372.1-P
Bra006952.1-P
Bra011325.1-P
Bra022073.1-P
Bra024989.1-P
Bra026434.1-P
Bra028535.1-P
Bra030034.1-P
Bra032817.1-P
Bra040067.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	Bra030034.1-P	AT1G27300.1	21798944
AT5G39510.1	Bra032817.1-P	AT1G27300.1	21798944
AT5G39510.1	Bra006952.1-P	AT3G52850.1	10397763
AT5G39510.1	Bra028535.1-P	AT3G52850.1	10397763
AT5G39510.1	Bra026434.1-P	AT4G26455.1	21798944
AT5G39510.1	Bra011325.1-P	AT4G32150.1	24556575
AT5G39510.1	Bra040067.1-P	AT4G32150.1	24556575
AT5G39510.1	Bra006372.1-P	AT5G16830.1	10397763
AT5G39510.1	Bra022073.1-P	AT5G46860.1	12815100
AT5G39510.1	Bra024989.1-P	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74451	Canola	cytosol, golgi, nucleus	100.0	100.0
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	82.35	82.35
Bra036218.1-P	Field mustard	cytosol	82.35	82.35
KRG93576	Soybean	cytosol	71.95	71.95
PGSC0003DMT400050219	Potato	cytosol	71.95	71.95
KRH18448	Soybean	endoplasmic reticulum	71.49	71.49
Solyc03g115760.2.1	Tomato	nucleus, plastid	71.49	71.49
VIT_14s0108g01200.t01	Wine grape	cytosol	70.14	70.14
Bra025661.1-P	Field mustard	cytosol, golgi, mitochondrion, nucleus, plastid	27.6	66.3
KRH40042	Soybean	cytosol	60.18	58.59
Bra041108.1-P	Field mustard	cytosol	58.37	51.6

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.400	MapMan:22.7.2.1	EnsemblPlantsGene:Bra040987	EnsemblPlants:Bra040987.1	EnsemblPlants:Bra040987.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	InterPro:GOSR2/Membrin/Bos1	InterPro:IPR038407	UniProt:M4FIQ8	PFAM:PF05008	PFAM:PF12352
PIRSF:PIRSF028865	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	InterPro:SNARE	SUPFAM:SSF47661	SUPFAM:SSF58038
TMHMM:TMhelix	UniParc:UPI000253EB55	InterPro:Vesicle_trsprt_v-SNARE_N	SEG:seg	InterPro:v-SNARE_N_sf	:

Description

AT5G39510 (E=2e-094) VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A | SGR4 (SHOOT GRAVITROPSIM 4); receptor

Coordinates

chrScaffold000355:+:17506..18703

Molecular Weight (calculated)

24741.0 Da

IEP (calculated)

10.377

GRAVY (calculated)

-0.400

Length

221 amino acids

Sequence
(BLAST)

001: MTEVFNGYER QYCDLSANLS KKCSSALALD GEQKKQKLSE IRSGLDNAEA LIRKMDVEAR SLPPSIRTSL LVKLREFKSD LNNFKSEVKR ITSANLNAAA
101: RDELLEAGLA DTKTASADQR ARLMMSTDRL GRTTDRIKDS RRMMIETEEL GVSVLQDLHS QRQSLLRTGD TLSGVDENVG KSKKILTGMT RRMNRNKWTI
201: GAIITALVAA IILILYFKLT K

Best Arabidopsis Sequence Match ( AT5G39510.1 )
(BLAST)

001: MSDVFDGYER QYCELSASLS KKCSSAISLD GEQKKQKLSE IKSGLENAEV LIRKMDLEAR TLPPNLKSSL LVKLREFKSD LNNFKTEVKR ITSGQLNAAA
101: RDELLEAGMA DTKTASADQR ARLMMSTERL GRTTDRVKDS RRTMMETEEI GVSILQDLHG QRQSLLRAHE TLHGVDDNIG KSKKILTDMT RRMNKNKWTI
201: GAIIIALIAA IFIILYFKLT K

Arabidopsis Description

VTI11Vesicle transport v-SNARE 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9SEL6]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.