Factsheet for Bra040067.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4
nucleus 2
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra022073.1-P
Bra024989.1-P
Bra025661.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Bra025661.1-P	AT5G39510.1	24556609
AT4G32150.1	Bra040987.1-P	AT5G39510.1	24556609
AT4G32150.1	Bra022073.1-P	AT5G46860.1	24556609
AT4G32150.1	Bra024989.1-P	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY61387	Canola	endoplasmic reticulum, plasma membrane	100.0	100.0
AT4G32150.1	Thale cress	golgi, plasma membrane	96.35	96.35
VIT_04s0008g05650.t01	Wine grape	extracellular	85.39	85.0
KRH73537	Soybean	endoplasmic reticulum	84.47	84.47
KRH14588	Soybean	endoplasmic reticulum	84.02	84.02
Bra008987.1-P	Field mustard	mitochondrion	84.02	83.26
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	82.65	82.27
PGSC0003DMT400067225	Potato	mitochondrion	82.65	82.27
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	80.82	80.45
GSMUA_Achr6P35140_001	Banana	plasma membrane	79.91	79.55
OQU75937	Sorghum	plasma membrane	76.71	76.02
Os06t0174400-01	Rice	plasma membrane	73.52	72.85
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	72.6	71.95
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	72.6	71.95
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	72.15	71.49
Os02t0803600-01	Rice	plasma membrane	70.78	68.58
Zm00001d037483_P002	Maize	plasma membrane	77.17	66.54
EES05972	Sorghum	cytosol	68.95	66.23
KRH03646	Soybean	plasma membrane	67.12	65.33
KRH20159	Soybean	plastid	66.67	65.18
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.95	64.81
Zm00001d018408_P001	Maize	cytosol	66.67	64.6
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.49	64.38
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.04	63.95
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	70.78	63.01
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	55.71	55.2
Bra020187.1-P	Field mustard	endoplasmic reticulum	54.79	54.3
Bra011325.1-P	Field mustard	endoplasmic reticulum	88.13	52.88
Bra030588.1-P	Field mustard	endoplasmic reticulum	40.18	40.18
Bra015345.1-P	Field mustard	endoplasmic reticulum	40.18	40.0
Bra032493.1-P	Field mustard	cytosol	39.73	39.55
Bra005568.1-P	Field mustard	cytosol	39.27	39.09
Bra005523.1-P	Field mustard	cytosol, extracellular	39.27	38.56
Bra022926.1-P	Field mustard	endoplasmic reticulum	38.81	38.29
Bra022893.1-P	Field mustard	cytosol	37.9	37.73
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	37.44	37.44
Bra021804.1-P	Field mustard	cytosol	36.53	36.36
Bra033511.1-P	Field mustard	cytosol	35.62	35.14
Bra014823.1-P	Field mustard	golgi	37.44	33.88
Bra007063.1-P	Field mustard	cytosol, plasma membrane	36.53	33.33
Bra003177.1-P	Field mustard	cytosol	35.62	32.37
Bra038066.1-P	Field mustard	cytosol	24.2	26.24

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra040067	EnsemblPlants:Bra040067.1	EnsemblPlants:Bra040067.1-P
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4FG42	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF104	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0002546B35	SEG:seg	:	:	:

Description

AT4G32150 (E=5e-110) VAMP711, ATVAMP711 | ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)

Coordinates

chrA08:+:13198104..13199204

Molecular Weight (calculated)

25130.5 Da

IEP (calculated)

9.594

GRAVY (calculated)

-0.094

Length

219 amino acids

Sequence
(BLAST)

001: MAILYALVAR GTVVLAEFTA TSTNASTIAK QILEKVPGNN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTAQA
101: YAMNEEFSRV LSQQIEYYSN DPNADRINRI KGEMNQVRNV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR STVWWRNCKL TFLLILLLLV
201: IIYIAVAFVC HGPTLPSCI

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.