Factsheet for Zm00001d037483_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
peroxisome 1
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, peroxisome, secretory
iPSORT:	mitochondrion
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008333_P003
Zm00001d017756_P001
Zm00001d039536_P001
Zm00001d040286_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Zm00001d008333_P003	AT5G46860.1	24556609
AT4G32150.1	Zm00001d017756_P001	AT5G46860.1	24556609
AT4G32150.1	Zm00001d039536_P001	AT5G46860.1	24556609
AT4G32150.1	Zm00001d040286_P003	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU75937	Sorghum	plasma membrane	85.43	98.19
Os06t0174400-01	Rice	plasma membrane	80.31	92.31
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	79.53	91.4
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	79.53	91.4
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	79.13	90.95
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	78.74	81.3
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	70.08	80.91
GSMUA_Achr6P35140_001	Banana	plasma membrane	70.08	80.91
Zm00001d018408_P001	Maize	cytosol	69.69	78.32
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	66.54	77.17
CDY61387	Canola	endoplasmic reticulum, plasma membrane	66.54	77.17
AT4G32150.1	Thale cress	golgi, plasma membrane	66.14	76.71
VIT_04s0008g05650.t01	Wine grape	extracellular	65.75	75.91
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	65.75	75.91
PGSC0003DMT400067225	Potato	mitochondrion	65.75	75.91
KRH73537	Soybean	endoplasmic reticulum	64.96	75.34
CDX75224	Canola	endoplasmic reticulum, plasma membrane	64.96	75.0
KRH14588	Soybean	endoplasmic reticulum	64.57	74.89
CDX68821	Canola	endoplasmic reticulum, plasma membrane	64.57	74.55
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	62.99	73.06
CDX69781	Canola	plasma membrane	62.6	71.95
CDX97084	Canola	plasma membrane	62.2	71.49
Bra008987.1-P	Field mustard	mitochondrion	61.42	70.59
AT5G11150.2	Thale cress	golgi, plasma membrane	60.24	67.7
KRH03646	Soybean	plasma membrane	56.69	64.0
KRH20159	Soybean	plastid	55.91	63.39
Zm00001d052756_P001	Maize	endoplasmic reticulum	45.67	60.1
Bra011325.1-P	Field mustard	endoplasmic reticulum	59.06	41.1
Zm00001d007767_P001	Maize	extracellular	33.86	38.74
Zm00001d027808_P001	Maize	cytosol, mitochondrion	30.32	34.84
Zm00001d019091_P002	Maize	vacuole	33.46	32.57
Zm00001d031942_P003	Maize	plastid	29.92	31.54
Zm00001d019298_P002	Maize	cytosol	31.1	31.23
Zm00001d005468_P001	Maize	cytosol	31.1	31.23
Zm00001d013055_P002	Maize	extracellular, plasma membrane	28.74	30.93
Zm00001d034505_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	27.95	24.91
Zm00001d053132_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	12.2	23.13
Zm00001d048443_P002	Maize	peroxisome	26.38	21.61

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:A0A1D6LY65	ProteinID:AQK84083.1	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0008458D10
EnsemblPlantsGene:Zm00001d037483	EnsemblPlants:Zm00001d037483_P002	EnsemblPlants:Zm00001d037483_T002	SEG:seg	:	:

Description

Vesicle-associated membrane protein 711

Coordinates

chr6:-:126834361..126837493

Molecular Weight (calculated)

28923.2 Da

IEP (calculated)

10.063

GRAVY (calculated)

0.021

Length

254 amino acids

Sequence
(BLAST)

001: MAILYALVAR GTVVLAEHSA AATNAGAIAR QVLERLPDGG ADSHVSYTQD RYVFHAKRTD GITALCMADD AAGRRIPFAF LEDIHGRFVK TYGRAALTAL
101: AYAMNDEFSR VLSQQMDYYS NDPSADRINR MRGEINQVMH PFFKNSIDLA HWSGRVSQYK RIYLFIIFSQ VRSVMIDNID KVLERGDRLE LLVDKTANMQ
201: GNTVRFKRQA RRFRNTVWWR NVKLTAALIL LLLVIIYVVL VFVCHGFTLP TCIR

Best Arabidopsis Sequence Match ( AT5G11150.1 )
(BLAST)

001: MAIIFALVAR GTVVLSEFSA TSTNASSISK QILEKLPGND SDSHMSYSQD RYIFHVKRTD GLTVLCMADE TAGRNIPFAF LDDIHQRFVK TYGRAIHSAQ
101: AYSMNDEFSR VLSQQMEFYS NDPNADRMSR IKGEMSQVRN VMIENIDKVL DRGERLELLV DKTENMQGNT FRFRKQARRY RTIMWWRNVK LTIALILVLA
201: LVVYIAMAFV CHGPSLPSCF K

Arabidopsis Description

ATVAMP713vesicle-associated membrane protein 713 [Source:TAIR;Acc:AT5G11150]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.