Factsheet for Zm00001d005468_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34786	Sorghum	cytosol	94.07	95.58
Zm00001d019298_P002	Maize	cytosol	89.72	89.72
Os07t0249200-01	Rice	cytosol	86.17	87.9
GSMUA_Achr9P30970_001	Banana	cytosol	64.03	71.05
KRH50864	Soybean	cytosol	60.87	69.68
VIT_05s0020g01430.t01	Wine grape	cytosol	60.47	69.23
KRH02246	Soybean	cytosol	60.47	69.23
KRH12042	Soybean	cytosol	59.68	68.33
KRH37118	Soybean	cytosol	58.89	66.82
Bra033511.1-P	Field mustard	cytosol	58.5	66.67
CDY44179	Canola	cytosol	58.5	66.67
CDY22900	Canola	cytosol, plasma membrane, plastid	58.1	66.22
Solyc01g066940.2.1	Tomato	cytosol	57.71	66.06
AT4G15780.1	Thale cress	cytosol	47.83	65.76
Zm00001d007767_P001	Maize	extracellular	53.75	61.26
Zm00001d027808_P001	Maize	cytosol, mitochondrion	47.43	54.3
CDY22757	Canola	cytosol	43.08	53.96
Bra038066.1-P	Field mustard	cytosol	43.08	53.96
Zm00001d019091_P002	Maize	vacuole	53.36	51.72
Zm00001d013055_P002	Maize	extracellular, plasma membrane	48.22	51.69
TraesCS5D01G003800.1	Wheat	cytosol	47.04	51.52
TraesCS5A01G003100.1	Wheat	cytosol	47.04	51.29
PGSC0003DMT400029447	Potato	cytosol	56.92	48.65
Zm00001d031942_P003	Maize	plastid	43.87	46.06
Zm00001d053132_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	21.74	41.04
Zm00001d034505_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	44.66	39.65
Zm00001d052756_P001	Maize	endoplasmic reticulum	26.88	35.23
Zm00001d048443_P002	Maize	peroxisome	42.69	34.84
Zm00001d018408_P001	Maize	cytosol	28.46	31.86
Zm00001d037483_P002	Maize	plasma membrane	31.23	31.1

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100193599	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:A0A1D6EN56
ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	ProteinID:ONM21240.1
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF72	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0002215273	EnsemblPlantsGene:Zm00001d005468	EnsemblPlants:Zm00001d005468_P001	EnsemblPlants:Zm00001d005468_T001	SEG:seg	:

Description

vesicle-associated membrane protein 724

Coordinates

chr2:+:175202127..175205252

Molecular Weight (calculated)

27965.8 Da

IEP (calculated)

8.963

GRAVY (calculated)

-0.194

Length

253 amino acids

Sequence
(BLAST)

001: MVSPAPGCRD SGEDGGKAEW LIYAFVARGI AVLAEYTEFT GNFPAIAAQC LQRLPAGSSS ASTGPDGRGG APVRFSYACD GHTFNFLLHR GYAYCVVAKE
101: SVPKNVSVAF LERLKDDFMK RYGGGKADTA LAKSLNKEYG PVIKQHIQYV LDHSQELDKT LKVQAQVSEV KNIMLNNIEK TLDRGEKLSE LQDKTSDLHS
201: QAQEFKKQGV KIRRKTWLQN VKIKLVILGI LLLLVIIVWV SVCQGFDCTK HET

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.