Factsheet for Bra033511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22900	Canola	cytosol, plasma membrane, plastid	99.1	99.1
AT4G15780.1	Thale cress	cytosol	78.83	95.11
KRH50864	Soybean	cytosol	89.64	90.05
KRH02246	Soybean	cytosol	88.74	89.14
KRH12042	Soybean	cytosol	88.29	88.69
KRH37118	Soybean	cytosol	86.49	86.1
Solyc01g066940.2.1	Tomato	cytosol	83.33	83.71
VIT_05s0020g01430.t01	Wine grape	cytosol	81.98	82.35
Bra038066.1-P	Field mustard	cytosol	70.72	77.72
Bra005568.1-P	Field mustard	cytosol	70.72	71.36
GSMUA_Achr9P30970_001	Banana	cytosol	72.52	70.61
Bra022893.1-P	Field mustard	cytosol	69.82	70.45
Bra015345.1-P	Field mustard	endoplasmic reticulum	68.92	69.55
Bra021804.1-P	Field mustard	cytosol	68.47	69.09
Bra032493.1-P	Field mustard	cytosol	68.47	69.09
Bra005523.1-P	Field mustard	cytosol, extracellular	69.37	69.06
Bra030588.1-P	Field mustard	endoplasmic reticulum	68.02	68.95
Bra022926.1-P	Field mustard	endoplasmic reticulum	68.92	68.92
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	63.96	64.84
PGSC0003DMT400029447	Potato	cytosol	82.88	62.16
Os07t0249200-01	Rice	cytosol	68.47	61.29
KXG34786	Sorghum	cytosol	67.12	59.84
Zm00001d005468_P001	Maize	cytosol	66.67	58.5
Zm00001d019298_P002	Maize	cytosol	64.41	56.52
TraesCS5D01G003800.1	Wheat	cytosol	55.86	53.68
TraesCS5A01G003100.1	Wheat	cytosol	55.86	53.45
Bra003177.1-P	Field mustard	cytosol	52.7	48.55
Bra014823.1-P	Field mustard	golgi	52.7	48.35
Bra007063.1-P	Field mustard	cytosol, plasma membrane	52.25	48.33
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	35.14	35.62
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	33.33	33.48
Bra020187.1-P	Field mustard	endoplasmic reticulum	32.88	33.03
Bra008987.1-P	Field mustard	mitochondrion	32.88	33.03
Bra011325.1-P	Field mustard	endoplasmic reticulum	31.98	19.45

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra033511	EnsemblPlants:Bra033511.1
EnsemblPlants:Bra033511.1-P	ncoils:Coil	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
UniProt:M4EXH4	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF72	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0002544A8F	SEG:seg	:	:

Description

AT4G15780 (E=9e-110) ATVAMP724, VAMP724 | ATVAMP724

Coordinates

chrA01:+:11493157..11494945

Molecular Weight (calculated)

25205.6 Da

IEP (calculated)

8.684

GRAVY (calculated)

-0.138

Length

222 amino acids

Sequence
(BLAST)

001: MGQESFIYSF VARGTMVLAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGFAYCVVA KDALSKQISI AFLERVKADF KKRYGGGKAS
101: TAIPKSLNKE FGPVMKEHME YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAQEYKKQ GTQVRRKLWY QNMKIKLVVL
201: GILLLLVLII WLSVCHGFNC TD

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.