CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12042	Soybean	cytosol	96.41	97.29
KRH50864	Soybean	cytosol	91.93	92.76
KRH02246	Soybean	cytosol	91.03	91.86
AT4G15780.1	Thale cress	cytosol	71.75	86.96
CDY22900	Canola	cytosol, plasma membrane, plastid	86.55	86.94
VIT_05s0020g01430.t01	Wine grape	cytosol	86.1	86.88
Bra033511.1-P	Field mustard	cytosol	86.1	86.49
CDY44179	Canola	cytosol	86.1	86.49
Solyc01g066940.2.1	Tomato	cytosol	84.3	85.07
KRH33448	Soybean	extracellular, golgi	21.97	77.78
GSMUA_Achr9P30970_001	Banana	cytosol	73.99	72.37
Bra038066.1-P	Field mustard	cytosol	64.13	70.79
CDY22757	Canola	cytosol	64.13	70.79
KRH46773	Soybean	endoplasmic reticulum	69.96	70.59
KRG99810	Soybean	endoplasmic reticulum	69.96	70.59
KRG90219	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	66.82	67.42
KRH36720	Soybean	endoplasmic reticulum	65.92	66.52
KRH11727	Soybean	cytosol	65.47	66.06
KRG89410	Soybean	cytosol	65.47	64.89
KRH50475	Soybean	endoplasmic reticulum	65.02	64.44
PGSC0003DMT400029447	Potato	cytosol	84.3	63.51
Os07t0249200-01	Rice	cytosol	68.61	61.69
KXG34786	Sorghum	cytosol	67.26	60.24
Zm00001d005468_P001	Maize	cytosol	66.82	58.89
Zm00001d019298_P002	Maize	cytosol	65.92	58.1
TraesCS5D01G003800.1	Wheat	cytosol	57.4	55.41
TraesCS5A01G003100.1	Wheat	cytosol	57.4	55.17
KRH33450	Soybean	cytosol	41.26	52.27
KRH36005	Soybean	endoplasmic reticulum	55.16	51.68
KRG99807	Soybean	cytosol	51.12	51.58
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	47.53	41.9
KRH57708	Soybean	plastid	21.97	41.53
KRH73537	Soybean	endoplasmic reticulum	32.74	33.33
KRH30399	Soybean	endoplasmic reticulum	32.74	33.18
KRH25265	Soybean	plasma membrane	32.74	33.18
KRH14588	Soybean	endoplasmic reticulum	32.29	32.88
KRH03646	Soybean	plasma membrane	29.6	29.33
KRH20159	Soybean	plastid	29.15	29.02

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100786244	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	EMBL:ACUP02005417
EMBL:ACUP02005418	EnsemblPlantsGene:GLYMA_09G045400	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810
GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	UniProt:I1L108	InterPro:IPR001388	InterPro:IPR010908
EnsemblPlants:KRH37118	ProteinID:KRH37118	ProteinID:KRH37118.1	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136
PANTHER:PTHR21136:SF72	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0002337CF2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:3886860..3890548

Molecular Weight (calculated)

25376.0 Da

IEP (calculated)

9.316

GRAVY (calculated)

-0.093

Length

223 amino acids

Sequence
(BLAST)

001: MSQESFIYSF VARGTMLLAE YTEFTGNFPA IAAQCLQKLP SSNNKFTYNC DHHTFNFLVE DGYAYCVVAK ESVSKQISIA FLERVKADFK KRYGGGKADT
101: AIAKSLNKEF GPVMKEHMKY IINHAEEIVK LIKVKAQVSE VKSIMLENID KALDRGENLT ILADKTEALR SHAQDFRKQG TQVRRKMWYQ NMKIKLVVLG
201: ILLVLVLVIW LSICGGFDCT NWQ

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.