Factsheet for Solyc01g066940.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50864	Soybean	cytosol	87.33	87.33
KRH12042	Soybean	cytosol	86.43	86.43
KRH02246	Soybean	cytosol	86.43	86.43
KRH37118	Soybean	cytosol	85.07	84.3
AT4G15780.1	Thale cress	cytosol	69.68	83.7
Bra033511.1-P	Field mustard	cytosol	83.71	83.33
CDY44179	Canola	cytosol	83.26	82.88
CDY22900	Canola	cytosol, plasma membrane, plastid	83.26	82.88
VIT_05s0020g01430.t01	Wine grape	cytosol	82.81	82.81
PGSC0003DMT400029447	Potato	cytosol	98.64	73.65
GSMUA_Achr9P30970_001	Banana	cytosol	75.11	72.81
Solyc06g083530.2.1	Tomato	plastid	70.59	70.91
Solyc09g061620.2.1	Tomato	nucleus, plastid	68.78	69.09
CDY22757	Canola	cytosol	60.18	65.84
Bra038066.1-P	Field mustard	cytosol	60.18	65.84
Solyc12g098180.1.1	Tomato	cytosol, vacuole	65.61	65.61
Solyc09g091610.2.1	Tomato	plastid	65.61	65.61
Solyc02g069150.2.1	Tomato	nucleus	64.25	63.96
Os07t0249200-01	Rice	cytosol	69.23	61.69
KXG34786	Sorghum	cytosol	66.52	59.04
Zm00001d005468_P001	Maize	cytosol	66.06	57.71
Zm00001d019298_P002	Maize	cytosol	65.16	56.92
TraesCS5A01G003100.1	Wheat	cytosol	59.73	56.9
TraesCS5D01G003800.1	Wheat	cytosol	58.82	56.28
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	52.49	48.33
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	31.22	31.36
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	32.13	27.2
Solyc12g098170.1.1	Tomato	cytosol	14.48	10.49

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388
InterPro:IPR010908	UniProt:K4AWU3	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF72	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc01g066940.2	EnsemblPlants:Solyc01g066940.2.1	InterPro:Synaptobrevin	TMHMM:TMhelix
UniParc:UPI0002762D44	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:75210356..75215737

Molecular Weight (calculated)

25131.6 Da

IEP (calculated)

8.911

GRAVY (calculated)

-0.109

Length

221 amino acids

Sequence
(BLAST)

001: MGQESFIYSF VARGTMVLAE YTEFTGNFPA IAAQCLQKLP SSNNKFTYNC DHHTFNFLVQ DGYAYCVVSK ESVGKQISIA FLERVRADFN KRYGGGKADT
101: AVAKSLNKEF GPVMKEHMQY IIDHADEIEK LLKVKAQVSE VKSIMLENID KAIERGEDLT ILSGKTENLR DSALEFKTKG TQIRRKMWYQ NMKIKLVVFG
201: IILLLVLIIW LSICRGFNCT N

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.