CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005468_P001	Maize	cytosol	95.58	94.07
Zm00001d019298_P002	Maize	cytosol	92.77	91.3
Os07t0249200-01	Rice	cytosol	89.16	89.52
GSMUA_Achr9P30970_001	Banana	cytosol	66.27	72.37
VIT_05s0020g01430.t01	Wine grape	cytosol	62.25	70.14
KRH50864	Soybean	cytosol	62.25	70.14
KRH02246	Soybean	cytosol	61.85	69.68
KRH12042	Soybean	cytosol	61.04	68.78
KRH37118	Soybean	cytosol	60.24	67.26
Bra033511.1-P	Field mustard	cytosol	59.84	67.12
CDY44179	Canola	cytosol	59.84	67.12
CDY22900	Canola	cytosol, plasma membrane, plastid	59.44	66.67
Solyc01g066940.2.1	Tomato	cytosol	59.04	66.52
AT4G15780.1	Thale cress	cytosol	48.59	65.76
EER96027	Sorghum	extracellular	55.02	61.71
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	53.41	60.45
Bra038066.1-P	Field mustard	cytosol	44.18	54.46
CDY22757	Canola	cytosol	44.18	54.46
KXG40114	Sorghum	cytosol, vacuole	47.39	53.64
KXG24150	Sorghum	cytosol	46.99	51.09
PGSC0003DMT400029447	Potato	cytosol	58.23	48.99
KXG25383	Sorghum	plastid	44.58	46.06
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	12.85	38.55
OQU75937	Sorghum	plasma membrane	32.13	36.2
EES05972	Sorghum	cytosol	30.12	32.89
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	28.92	32.43

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	UniProt:A0A1B6QA43	ncoils:Coil
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192
InterPro:IPR001388	InterPro:IPR010908	EnsemblPlants:KXG34786	ProteinID:KXG34786	ProteinID:KXG34786.2	InterPro:Longin-like_dom_sf
InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF72	SMART:SM01270	EnsemblPlantsGene:SORBI_3002G092200	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI0009DC9081	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:9589590..9592430

Molecular Weight (calculated)

27401.1 Da

IEP (calculated)

9.116

GRAVY (calculated)

-0.202

Length

249 amino acids

Sequence
(BLAST)

001: MGGKDAGEGG GKAEWLIYAF VARGTAVLAE YTEFTGNFPA IAAQCLQRLP AGSSSAASTG PDGRGGAPVR FSYACDGHTF NFLLHRGYAY CVVAKESVPK
101: NVSVAFLERL KDDFMKRYGG GKADTALAKS LNKEYGPVIK QHIQYVLDHS EELDKTLKVQ AQVSEVKNIM LDNIEKTLGR GEKLSELQDK TSDLHSQAQE
201: FKKQGVKIRR KTWLQNMKIK LVILGILLLL VIIVWVSVCQ GFDCTKHET

Best Arabidopsis Sequence Match ( AT4G15780.1 )
(BLAST)

001: MGQESFIYSF VARGTMILAE YTEFTGNFPS IAAQCLQKLP SSSNSKFTYN CDHHTFNFLV EDGYAYCVVA KDSLSKQISI AFLERVKADF KKRYGGGKAS
101: TAIAKSLNKE FGPVMKEHMN YIVDHAEEIE KLIKVKAQVS EVKSIMLENI DKAIDRGENL TVLTDKTENL RSQAREYKKT KGHR

Arabidopsis Description

ATVAMP724vesicle-associated membrane protein 724 [Source:TAIR;Acc:AT4G15780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.