CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031942_P003	Maize	plastid	63.86	21.99
Os08t0558600-01	Rice	extracellular	63.86	21.99
KXG25383	Sorghum	plastid	63.86	21.99
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	63.86	21.9
TraesCS7B01G181100.1	Wheat	cytosol, plastid	63.86	21.9
TraesCS7A01G279100.1	Wheat	cytosol, plastid	63.86	21.9
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	55.42	19.33
CDY13199	Canola	plasma membrane	45.78	19.1
KRH36005	Soybean	endoplasmic reticulum	53.01	18.49
EER96027	Sorghum	extracellular	49.4	18.47
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	53.01	18.41
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	53.01	18.33
OQU90815	Sorghum	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	48.19	18.18
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	51.81	17.92
AT3G54300.3	Thale cress	cytosol	50.6	17.5
CDX76153	Canola	cytosol	50.6	17.36
KXG40114	Sorghum	cytosol, vacuole	45.78	17.27
CDY07551	Canola	cytosol	49.4	17.08
Bra007063.1-P	Field mustard	cytosol, plasma membrane	49.4	17.08
CDX67594	Canola	cytosol	49.4	17.01
Bra003177.1-P	Field mustard	cytosol	49.4	17.01
CDX78228	Canola	cytosol, plasma membrane	48.19	16.67
CDX73490	Canola	plasma membrane	48.19	16.6
Bra014823.1-P	Field mustard	golgi	48.19	16.53
KXG24150	Sorghum	cytosol	40.96	14.85
EES13179	Sorghum	endoplasmic reticulum, plasma membrane	36.14	13.51
KXG34786	Sorghum	cytosol	38.55	12.85
EES05972	Sorghum	cytosol	31.33	11.4
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	33.73	11.07
OQU75937	Sorghum	plasma membrane	27.71	10.41

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	UniProt:C5Y4Q8	EnsemblPlants:EES09956	ProteinID:EES09956	ProteinID:EES09956.1
GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	InterPro:IPR001388	PFAM:PF00957	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169
EnsemblPlantsGene:SORBI_3005G155500	SUPFAM:SSF58038	InterPro:Synaptobrevin	UniParc:UPI0001A86B7A	RefSeq:XP_002450968.1	:

Description

hypothetical protein

Coordinates

chr5:-:62712523..62713590

Molecular Weight (calculated)

9627.0 Da

IEP (calculated)

11.713

GRAVY (calculated)

-0.294

Length

83 amino acids

Sequence
(BLAST)

1: MARVVDLAVG RPAPSTSLLG ARLQILDRRE KIELLVGKTE TLRSQADSFH RHGRELRRKM WLQNLRFKLM VFVEHCSLSL TKN

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.