Factsheet for PGSC0003DMT400061574

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, plasma membrane

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 3
plasma membrane 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	97.92	97.92
KRH36005	Soybean	endoplasmic reticulum	88.33	89.08
AT3G54300.3	Thale cress	cytosol	87.5	87.5
CDX67594	Canola	cytosol	87.08	86.72
Bra003177.1-P	Field mustard	cytosol	86.67	86.31
Bra007063.1-P	Field mustard	cytosol, plasma membrane	86.25	86.25
CDY07551	Canola	cytosol	86.25	86.25
CDX76153	Canola	cytosol	86.67	85.95
CDX78228	Canola	cytosol, plasma membrane	85.83	85.83
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	85.42	85.77
Bra014823.1-P	Field mustard	golgi	85.83	85.12
CDX73490	Canola	plasma membrane	85.42	85.06
GSMUA_Achr8P32930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.58	80.25
CDY13199	Canola	plasma membrane	65.0	78.39
Os08t0558600-01	Rice	extracellular	76.25	75.93
TraesCS7D01G278900.1	Wheat	plasma membrane, plastid	75.83	75.21
TraesCS7A01G279100.1	Wheat	cytosol, plastid	75.0	74.38
TraesCS7B01G181100.1	Wheat	cytosol, plastid	75.0	74.38
KXG25383	Sorghum	plastid	74.58	74.27
Zm00001d031942_P003	Maize	plastid	74.58	74.27
KRG90750	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	75.42	71.54
PGSC0003DMT400006104	Potato	cytosol, extracellular	57.08	62.27
PGSC0003DMT400051941	Potato	cytosol	56.25	61.36
PGSC0003DMT400026763	Potato	cytosol	56.25	60.81
PGSC0003DMT400076273	Potato	cytosol	55.42	60.18
EES09956	Sorghum	cytosol, mitochondrion, nucleus, plastid	17.92	51.81
PGSC0003DMT400029447	Potato	cytosol	48.33	39.19
PGSC0003DMT400067225	Potato	mitochondrion	34.17	37.27
PGSC0003DMT400015063	Potato	plastid	30.42	32.02
PGSC0003DMT400043452	Potato	cytosol	35.83	23.31

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102582814	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0006623	GO:GO:0006810	GO:GO:0007033
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M1C7Q3
PFAM:PF00957	PFAM:PF13774	EnsemblPlantsGene:PGSC0003DMG400023968	PGSC:PGSC0003DMG400023968	EnsemblPlants:PGSC0003DMT400061574	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF169	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000296263A	RefSeq:XP_006361486.1
RefSeq:XP_015170775.1	SEG:seg	:	:	:	:

Description

ATVAMP727 [Source:PGSC_GENE;Acc:PGSC0003DMG400023968]

Coordinates

chr11:-:5515028..5522266

Molecular Weight (calculated)

27466.1 Da

IEP (calculated)

6.360

GRAVY (calculated)

-0.296

Length

240 amino acids

Sequence
(BLAST)

001: MNPKGLIYSF VARGTVVLAE HTPYSGNFST IAVQCLQKLP SNSSKYTYSC DGHTFNFLLD SGFVFLVVAD EPTGRSVPFV FLERVKDDFK KRYGSSIKND
101: GDPHPLADDN EEDDDLFGDR FSIAYNLDRE FGPKLKEHME YCMNHPDEMS KLSKLKAQIT EVKGIMMDNI EKVLDRGEKI ELLVDKTENL QFQADSFQRQ
201: GRQLRRKMWF QNLQMKLMVG GAVVIFIIII WLFACGGFKC

Best Arabidopsis Sequence Match ( AT3G54300.1 )
(BLAST)

001: MSQKGLIYSF VAKGTVVLAE HTPYSGNFST IAVQCLQKLP TNSSKYTYSC DGHTFNFLVD NGFVFLVVAD ESTGRSVPFV FLERVKEDFK KRYEASIKND
101: ERHPLADEDE DDDLFGDRFS VAYNLDREFG PILKEHMQYC MSHPEEMSKL SKLKAQITEV KGIMMDNIEK VLDRGEKIEL LVDKTENLQF QADSFQRQGR
201: QLRRKMWLQS LQMKLMVAGA VFSFILIVWV VACGGFKCSS

Arabidopsis Description

VAMP727Vesicle-associated membrane protein 727 [Source:UniProtKB/Swiss-Prot;Acc:Q9M376]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.