Factsheet for PGSC0003DMT400006104

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061620.2.1	Tomato	nucleus, plastid	99.55	99.55
VIT_07s0005g05790.t01	Wine grape	cytosol, vacuole	91.82	92.24
PGSC0003DMT400051941	Potato	cytosol	91.36	91.36
PGSC0003DMT400076273	Potato	cytosol	84.09	83.71
PGSC0003DMT400026763	Potato	cytosol	83.64	82.88
PGSC0003DMT400061574	Potato	endoplasmic reticulum, mitochondrion, plasma membrane	62.27	57.08
PGSC0003DMT400029447	Potato	cytosol	69.09	51.35
PGSC0003DMT400067225	Potato	mitochondrion	37.73	37.73
PGSC0003DMT400015063	Potato	plastid	35.0	33.77
PGSC0003DMT400043452	Potato	cytosol	51.36	30.62

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:102593105	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M0ZQU2	PFAM:PF00957	PFAM:PF13774
EnsemblPlantsGene:PGSC0003DMG400002370	PGSC:PGSC0003DMG400002370	EnsemblPlants:PGSC0003DMT400006104	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859
PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000296F5C0	RefSeq:XP_006364264.1	SEG:seg	:

Description

Vesicle-associated membrane protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002370]

Coordinates

chr9:+:44573470..44576936

Molecular Weight (calculated)

24775.4 Da

IEP (calculated)

8.775

GRAVY (calculated)

-0.065

Length

220 amino acids

Sequence
(BLAST)

001: MGQQSLIYSF VARGTVILAE YTEFTGNFTS IASQCLQKLP ASNNKFTYNC DGHTFNYLVE EGFTYCVVAV ESVGRQIPIA FLERTKEEFT KKYGGGKAAT
101: AVANSLNREF GPKLKEQMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR LQAQDFRTQG TTMRRKMWLQ NMKIKLIVLG
201: IIIALILIIV LSVCGGFKCH

Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)

001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT

Arabidopsis Description

VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.