Factsheet for VIT_07s0005g05790.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, cytosol

Predictor Summary:

plastid 1
nucleus 2
extracellular 3
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, vacuole
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061620.2.1	Tomato	nucleus, plastid	92.69	92.27
VIT_05s0136g00290.t01	Wine grape	extracellular	92.69	92.27
PGSC0003DMT400006104	Potato	cytosol, extracellular	92.24	91.82
PGSC0003DMT400051941	Potato	cytosol	90.87	90.45
Solyc06g083530.2.1	Tomato	plastid	90.87	90.45
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	83.56	82.81
VIT_05s0020g01430.t01	Wine grape	cytosol	71.23	70.59
VIT_13s0101g00410.t01	Wine grape	endoplasmic reticulum, golgi	64.38	59.0
VIT_04s0008g05650.t01	Wine grape	extracellular	37.9	37.73
VIT_06s0080g00800.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.9	37.73

Protein Annotations

Gene3D:1.20.5.110	EntrezGene:100252829	wikigene:100252829	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50
ProteinID:CBI37278	ProteinID:CBI37278.3	ncoils:Coil	UniProt:D7U3G1	EMBL:FN596502	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201
InterPro:IPR001388	InterPro:IPR010908	EntrezGene:LOC100252829	wikigene:LOC100252829	InterPro:Longin-like_dom_sf	InterPro:Longin_dom
PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892
PANTHER:PTHR21136	PANTHER:PTHR21136:SF92	SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	InterPro:Synaptobrevin
TIGR:TC53216	TMHMM:TMhelix	UniParc:UPI00015CC989	ArrayExpress:VIT_07s0005g05790	EnsemblPlantsGene:VIT_07s0005g05790	EnsemblPlants:VIT_07s0005g05790.t01
RefSeq:XP_002267063	RefSeq:XP_002267063.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:-:10117357..10123599

Molecular Weight (calculated)

24604.2 Da

IEP (calculated)

8.774

GRAVY (calculated)

-0.053

Length

219 amino acids

Sequence
(BLAST)

001: MGQQSLIYSF VARGTVILAE FTEFSGNFTS IAAQCLQKLP ATNNKFTYNC DGHTFNYLVE DGYTYCVVAV EAVGRQIPIA FLERVKEDFT KRYGGGKAAT
101: AVANSLNKEF GPKLKEQMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRQQG TKMRRKMWLQ NMKIKLIVLG
201: ILIALILIIV LSICGGFNC

Best Arabidopsis Sequence Match ( AT2G33120.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TQMRRKMWFQ NMKIKLIVLA
201: IIIALILIII LSICGGFNCG K

Arabidopsis Description

SAR1AT2G33120 protein [Source:UniProtKB/TrEMBL;Acc:B9DH97]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.