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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • plastid 1
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
  • extracellular 3
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:plastid
EpiLoc:nucleus
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:cytosol
plastid: 22908117
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400006104 Potato cytosol, extracellular 99.55 99.55
VIT_07s0005g05790.t01 Wine grape cytosol, vacuole 92.27 92.69
Solyc06g083530.2.1 Tomato plastid 91.82 91.82
Solyc09g091610.2.1 Tomato plastid 85.0 84.62
Solyc02g069150.2.1 Tomato nucleus 83.64 82.88
Solyc12g098180.1.1 Tomato cytosol, vacuole 79.55 79.19
Solyc01g066940.2.1 Tomato cytosol 69.09 68.78
Solyc11g006780.1.1 Tomato cytosol, mitochondrion, plasma membrane 61.82 56.67
Solyc06g065950.2.1 Tomato endoplasmic reticulum, nucleus 37.73 37.73
Solyc06g074250.2.1 Tomato endoplasmic reticulum, plasma membrane 39.09 32.95
Solyc12g098170.1.1 Tomato cytosol 15.91 11.48
Protein Annotations
Gene3D:1.20.5.110MapMan:13.4.2.3.4MapMan:22.7.5.1Gene3D:3.30.450.50GO:GO:0000149GO:GO:0003674
GO:GO:0005484GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006810GO:GO:0006887GO:GO:0006906GO:GO:0008150GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016043GO:GO:0016192GO:GO:0031201InterPro:IPR001388
InterPro:IPR010908UniProt:K4CTZ5InterPro:Longin-like_dom_sfInterPro:Longin_domPFAM:PF00957PFAM:PF13774
PRINTS:PR00219ScanProsite:PS00417PFscan:PS50859PFscan:PS50892PANTHER:PTHR21136PANTHER:PTHR21136:SF92
SMART:SM01270SUPFAM:SSF58038SUPFAM:SSF64356EnsemblPlantsGene:Solyc09g061620.2EnsemblPlants:Solyc09g061620.2.1InterPro:Synaptobrevin
TMHMM:TMhelixUniParc:UPI000276BB5BSEG:seg:::
Description
No Description!
Coordinates
chr9:+:60105785..60110190
Molecular Weight (calculated)
24749.3 Da
IEP (calculated)
8.775
GRAVY (calculated)
-0.086
Length
220 amino acids
Sequence
(BLAST)
001: MGQQSLIYSF VARGTVILAE YTEFTGNFTS IASQCLQKLP ASNNKFTYNC DGHTFNYLVE EGFTYCVVAV ESVGRQIPIA FLERTKEEFT KKYGGGKAAT
101: AVANSLNREF GPKLKEQMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TTMRRKMWLQ NMKIKLIVLG
201: IIIALILIIV LSVCGGFKCH
Best Arabidopsis Sequence Match ( AT2G32670.1 )
(BLAST)
001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
Arabidopsis Description
VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.