Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 2
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400006104 | Potato | cytosol, extracellular | 99.55 | 99.55 |
VIT_07s0005g05790.t01 | Wine grape | cytosol, vacuole | 92.27 | 92.69 |
Solyc06g083530.2.1 | Tomato | plastid | 91.82 | 91.82 |
Solyc09g091610.2.1 | Tomato | plastid | 85.0 | 84.62 |
Solyc02g069150.2.1 | Tomato | nucleus | 83.64 | 82.88 |
Solyc12g098180.1.1 | Tomato | cytosol, vacuole | 79.55 | 79.19 |
Solyc01g066940.2.1 | Tomato | cytosol | 69.09 | 68.78 |
Solyc11g006780.1.1 | Tomato | cytosol, mitochondrion, plasma membrane | 61.82 | 56.67 |
Solyc06g065950.2.1 | Tomato | endoplasmic reticulum, nucleus | 37.73 | 37.73 |
Solyc06g074250.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 39.09 | 32.95 |
Solyc12g098170.1.1 | Tomato | cytosol | 15.91 | 11.48 |
Protein Annotations
Gene3D:1.20.5.110 | MapMan:13.4.2.3.4 | MapMan:22.7.5.1 | Gene3D:3.30.450.50 | GO:GO:0000149 | GO:GO:0003674 |
GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 |
GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 | InterPro:IPR001388 |
InterPro:IPR010908 | UniProt:K4CTZ5 | InterPro:Longin-like_dom_sf | InterPro:Longin_dom | PFAM:PF00957 | PFAM:PF13774 |
PRINTS:PR00219 | ScanProsite:PS00417 | PFscan:PS50859 | PFscan:PS50892 | PANTHER:PTHR21136 | PANTHER:PTHR21136:SF92 |
SMART:SM01270 | SUPFAM:SSF58038 | SUPFAM:SSF64356 | EnsemblPlantsGene:Solyc09g061620.2 | EnsemblPlants:Solyc09g061620.2.1 | InterPro:Synaptobrevin |
TMHMM:TMhelix | UniParc:UPI000276BB5B | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr9:+:60105785..60110190
Molecular Weight (calculated)
24749.3 Da
IEP (calculated)
8.775
GRAVY (calculated)
-0.086
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQQSLIYSF VARGTVILAE YTEFTGNFTS IASQCLQKLP ASNNKFTYNC DGHTFNYLVE EGFTYCVVAV ESVGRQIPIA FLERTKEEFT KKYGGGKAAT
101: AVANSLNREF GPKLKEQMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TTMRRKMWLQ NMKIKLIVLG
201: IIIALILIIV LSVCGGFKCH
101: AVANSLNREF GPKLKEQMQY CVDHPEEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TTMRRKMWLQ NMKIKLIVLG
201: IIIALILIIV LSVCGGFKCH
001: MDRSVVPISL APFQFLLVFW IFLTSVHTNP NKQQKTVVSL SLWWNSKNRI RGCVWFFFLL RVTRTMGQQN LIYSFVARGT VILVEYTEFK GNFTAVAAQC
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
101: LQKLPSSNNK FTYNCDGHTF NYLVENGFTY CVVAVESVGR QIPMAFLERV KEDFNKRYGG GKATTAQANS LNREFGSKLK EHMQYCVDHP DEISKLAKVK
201: AQVTEVKGVM MENIEKVLDR GEKIELLVDK TENLRSQAQD FRTQGTKIRR KMWFENMKIK LIVLGIIITL ILIIILSVCG GFKCT
Arabidopsis Description
VAMP725Vesicle-associated membrane protein 725 [Source:UniProtKB/Swiss-Prot;Acc:O48850]
SUBAcon: [endoplasmic reticulum,golgi]
SUBAcon: [endoplasmic reticulum,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.