Factsheet for Solyc02g069150.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026763	Potato	cytosol	100.0	100.0
KRH36720	Soybean	endoplasmic reticulum	86.94	87.33
KRH11727	Soybean	cytosol	86.49	86.88
KRG89410	Soybean	cytosol	87.84	86.67
KRH50475	Soybean	endoplasmic reticulum	87.39	86.22
VIT_01s0011g01660.t01	Wine grape	endoplasmic reticulum	83.33	83.71
Solyc09g061620.2.1	Tomato	nucleus, plastid	82.88	83.64
Solyc06g083530.2.1	Tomato	plastid	81.53	82.27
Solyc09g091610.2.1	Tomato	plastid	78.38	78.73
Solyc12g098180.1.1	Tomato	cytosol, vacuole	72.97	73.3
Solyc01g066940.2.1	Tomato	cytosol	63.96	64.25
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	60.36	55.83
KRH57708	Soybean	plastid	25.23	47.46
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	37.39	37.73
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	36.49	31.03
Solyc12g098170.1.1	Tomato	cytosol	15.77	11.48

Protein Annotations

Gene3D:1.20.5.110	MapMan:13.4.2.3.4	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388
InterPro:IPR010908	UniProt:K4B7P7	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774
PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF92
SMART:SM01270	SUPFAM:SSF58038	SUPFAM:SSF64356	EnsemblPlantsGene:Solyc02g069150.2	EnsemblPlants:Solyc02g069150.2.1	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0002767EE0	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2:+:39096651..39102030

Molecular Weight (calculated)

25031.5 Da

IEP (calculated)

8.765

GRAVY (calculated)

-0.181

Length

222 amino acids

Sequence
(BLAST)

001: MGQQKALIYA FVGRGNVILA EYTDFSGNFN SIAYQCLQKL PASNNKFTYN CDGHTFNYLV DNGFTYCVVA EESVGRQIPI AFLERIKDDF MSKYGSGKAA
101: TAPPNSLNKE FGPKLKEHMQ YCAEHPEEIS KLAKVKAQVS EVKGVMMENI EKVLDRGEKI ELLVDKTENL HHQAQDFRNT GTQIRRKMWL QNMKIKLIVL
201: GILIALILII VLSVCKGFNC GK

Best Arabidopsis Sequence Match ( AT2G33120.1 )
(BLAST)

001: MAQQSLIYSF VARGTVILVE FTDFKGNFTS IAAQCLQKLP SSNNKFTYNC DGHTFNYLVE NGFTYCVVAV DSAGRQIPMA FLERVKEDFN KRYGGGKAAT
101: AQANSLNKEF GSKLKEHMQY CMDHPDEISK LAKVKAQVSE VKGVMMENIE KVLDRGEKIE LLVDKTENLR SQAQDFRTQG TQMRRKMWFQ NMKIKLIVLA
201: IIIALILIII LSICGGFNCG K

Arabidopsis Description

SAR1AT2G33120 protein [Source:UniProtKB/TrEMBL;Acc:B9DH97]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.