Factsheet for Solyc06g065950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g115760.2.1
Solyc06g062360.2.1
Solyc08g005200.2.1
Solyc08g076540.2.1
Solyc11g066910.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Solyc03g115760.2.1	AT5G39510.1	24556609
AT4G32150.1	Solyc06g062360.2.1	AT5G46860.1	24556609
AT4G32150.1	Solyc08g005200.2.1	AT5G46860.1	24556609
AT4G32150.1	Solyc08g076540.2.1	AT5G46860.1	24556609
AT4G32150.1	Solyc11g066910.1.1	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067225	Potato	mitochondrion	98.18	98.18
VIT_04s0008g05650.t01	Wine grape	extracellular	89.55	89.55
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	82.27	82.65
CDY61387	Canola	endoplasmic reticulum, plasma membrane	82.27	82.65
CDX75224	Canola	endoplasmic reticulum, plasma membrane	81.36	81.36
CDX68821	Canola	endoplasmic reticulum, plasma membrane	80.91	80.91
AT4G32150.1	Thale cress	golgi, plasma membrane	80.45	80.82
AT2G25340.1	Thale cress	endoplasmic reticulum, plasma membrane	79.09	79.45
GSMUA_Achr6P35140_001	Banana	plasma membrane	79.09	79.09
CDX69781	Canola	plasma membrane	79.09	78.73
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	78.18	78.18
CDX97084	Canola	plasma membrane	78.18	77.83
Bra008987.1-P	Field mustard	mitochondrion	77.73	77.38
OQU75937	Sorghum	plasma membrane	76.36	76.02
Os06t0174400-01	Rice	plasma membrane	75.0	74.66
AT5G11150.2	Thale cress	golgi, plasma membrane	75.0	73.01
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	72.73	72.4
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	72.73	72.4
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	72.27	71.95
Os02t0803600-01	Rice	plasma membrane	70.0	68.14
KRH20159	Soybean	plastid	68.64	67.41
KRH03646	Soybean	plasma membrane	68.64	67.11
Zm00001d018408_P001	Maize	cytosol	67.73	65.93
EES05972	Sorghum	cytosol	68.18	65.79
Zm00001d037483_P002	Maize	plasma membrane	75.91	65.75
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	69.55	65.67
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	69.09	65.24
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	68.64	64.81
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	70.91	63.41
Bra011325.1-P	Field mustard	endoplasmic reticulum	75.91	45.75
Solyc06g074250.2.1	Tomato	endoplasmic reticulum, plasma membrane	54.09	45.59
Solyc09g061620.2.1	Tomato	nucleus, plastid	37.73	37.73
Solyc12g098180.1.1	Tomato	cytosol, vacuole	37.73	37.56
Solyc02g069150.2.1	Tomato	nucleus	37.73	37.39
Solyc06g083530.2.1	Tomato	plastid	37.27	37.27
Solyc09g091610.2.1	Tomato	plastid	36.82	36.65
Solyc11g006780.1.1	Tomato	cytosol, mitochondrion, plasma membrane	37.73	34.58
Solyc01g066940.2.1	Tomato	cytosol	31.36	31.22
Solyc12g098170.1.1	Tomato	cytosol	8.18	5.9

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	InterPro:IPR001388	InterPro:IPR010908
UniProt:K4C7M3	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	PFAM:PF00957	PFAM:PF13774	PRINTS:PR00219
ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR21136	PANTHER:PTHR21136:SF104	SMART:SM01270
SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc06g065950.2	EnsemblPlants:Solyc06g065950.2.1	InterPro:Synaptobrevin
TMHMM:TMhelix	UniParc:UPI0002765B91	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:-:41333906..41337282

Molecular Weight (calculated)

25126.5 Da

IEP (calculated)

9.748

GRAVY (calculated)

-0.122

Length

220 amino acids

Sequence
(BLAST)

001: MTILYALVAR GSVVLAEQSG TSTNASTIAR QILEKIPGNN DSNASYSQDR YIFHVKRTDG LTVLCMADDS AGRRIPFAFL EEIHQKFVRT YGRAVLSAQA
101: YGMNDEFSRV LSQQMEYYSS DPNADRINRL KGEMSQVRTV MVENIDKVLE RGDRLELLVD KTANMQENTF RFRKQARRFR STVWWRNVKL TVALIFLLLV
201: IIYVILAFAC HGLTLPTCLK

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.