Factsheet for Bra011325.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 2
endoplasmic reticulum 4
plastid 1
extracellular 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra022073.1-P
Bra024989.1-P
Bra025661.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32150.1	Bra025661.1-P	AT5G39510.1	24556609
AT4G32150.1	Bra040987.1-P	AT5G39510.1	24556609
AT4G32150.1	Bra022073.1-P	AT5G46860.1	24556609
AT4G32150.1	Bra024989.1-P	AT5G46860.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75224	Canola	endoplasmic reticulum, plasma membrane	53.97	89.55
CDX68821	Canola	endoplasmic reticulum, plasma membrane	53.15	88.18
Bra040067.1-P	Field mustard	endoplasmic reticulum, plasma membrane	52.88	88.13
AT4G32150.1	Thale cress	golgi, plasma membrane	51.78	86.3
VIT_04s0008g05650.t01	Wine grape	extracellular	47.67	79.09
KRH73537	Soybean	endoplasmic reticulum	47.4	79.0
KRH14588	Soybean	endoplasmic reticulum	47.12	78.54
Bra008987.1-P	Field mustard	mitochondrion	47.12	77.83
PGSC0003DMT400067225	Potato	mitochondrion	46.58	77.27
Solyc06g065950.2.1	Tomato	endoplasmic reticulum, nucleus	45.75	75.91
GSMUA_Achr6P35140_001	Banana	plasma membrane	43.84	72.73
GSMUA_Achr9P09180_001	Banana	endoplasmic reticulum, plasma membrane	43.29	71.82
OQU75937	Sorghum	plasma membrane	41.1	67.87
Os06t0174400-01	Rice	plasma membrane	40.27	66.52
TraesCS7A01G136300.1	Wheat	plasma membrane, plastid	39.45	65.16
TraesCS7B01G037300.1	Wheat	plasma membrane, plastid	39.45	65.16
TraesCS7D01G136300.1	Wheat	endoplasmic reticulum, plasma membrane	39.18	64.71
KRH20159	Soybean	plastid	39.18	63.84
KRH03646	Soybean	plasma membrane	39.18	63.56
Os02t0803600-01	Rice	plasma membrane	38.9	62.83
Zm00001d018408_P001	Maize	cytosol	38.36	61.95
EES05972	Sorghum	cytosol	38.63	61.84
Zm00001d037483_P002	Maize	plasma membrane	41.1	59.06
TraesCS6A01G371800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	37.53	58.8
TraesCS6D01G355800.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	37.26	58.37
TraesCS6B01G409400.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	36.99	57.94
HORVU7Hr1G028250.1	Barley	peroxisome, plasma membrane	38.9	57.72
Bra006623.1-P	Field mustard	endoplasmic reticulum, plasma membrane	31.78	52.49
Bra020187.1-P	Field mustard	endoplasmic reticulum	31.51	52.04
Bra030588.1-P	Field mustard	endoplasmic reticulum	21.92	36.53
Bra015345.1-P	Field mustard	endoplasmic reticulum	21.92	36.36
Bra032493.1-P	Field mustard	cytosol	21.64	35.91
Bra005523.1-P	Field mustard	cytosol, extracellular	21.64	35.43
Bra022926.1-P	Field mustard	endoplasmic reticulum	21.37	35.14
Bra005568.1-P	Field mustard	cytosol	21.1	35.0
Bra022893.1-P	Field mustard	cytosol	20.82	34.55
Bra021828.1-P	Field mustard	endoplasmic reticulum, extracellular	20.55	34.25
Bra021804.1-P	Field mustard	cytosol	20.27	33.64
Bra007063.1-P	Field mustard	cytosol, plasma membrane	21.1	32.08
Bra033511.1-P	Field mustard	cytosol	19.45	31.98
Bra014823.1-P	Field mustard	golgi	20.55	30.99
Bra003177.1-P	Field mustard	cytosol	20.27	30.71
Bra038066.1-P	Field mustard	cytosol	12.88	23.27

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.5.1	Gene3D:3.30.450.50	EnsemblPlantsGene:Bra011325	EnsemblPlants:Bra011325.1	EnsemblPlants:Bra011325.1-P
InterPro:Carb-bd-like_fold	InterPro:DUF2012	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	GO:GO:0030246	InterPro:IPR001388
InterPro:IPR010908	InterPro:Longin-like_dom_sf	InterPro:Longin_dom	UniProt:M4D4C1	PFAM:PF00957	PFAM:PF09430
PFAM:PF13774	PRINTS:PR00219	ScanProsite:PS00417	PFscan:PS50859	PFscan:PS50892	PANTHER:PTHR13605
PANTHER:PTHR13605:SF6	SMART:SM01270	SUPFAM:SSF49452	SUPFAM:SSF58038	SUPFAM:SSF64356	SignalP:SignalP-noTM
InterPro:Synaptobrevin	TMHMM:TMhelix	UniParc:UPI000254661C	SEG:seg	:	:

Description

AT4G32150 (E=5e-100) VAMP711, ATVAMP711 | ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)

Coordinates

chrA01:+:2723472..2727532

Molecular Weight (calculated)

41530.1 Da

IEP (calculated)

9.663

GRAVY (calculated)

-0.243

Length

365 amino acids

Sequence
(BLAST)

001: MAILYALVAR GTVVLAEFTA TSTNASTIAK QILEKVPGNN NDSNVSYSQD RYVFHVKRTD GLTVLCMAEE TAGRRIPFAF LEDIHQRFVR TYGRAVHTAQ
101: AYAMNEEFSR VLSQQIEYYS NDPNADRINR IKGEMSQVRD VMIENIDKVL DRGERLELLV DKTATMQGNT FRFRKQARRF RSTVWWRNCK LTTEDSYTIT
201: GRVRIPASTA IGHAAKFSNI NVVLNGGQNI TFLRPDGYFS FHKVPAGTHL IEVYALGFFF SPVRVDVSAR HHGKVQATLT ETRRSLTELV LEPLRADQYY
301: ELREPFNVMA ILKSPMGLMV GFMVVVVFLM PKLMENIDPE EMKRTQEELR NQGVPSLSSL LPASR

Best Arabidopsis Sequence Match ( AT4G32150.1 )
(BLAST)

001: MAILYALVAR GTVVLSEFTA TSTNASTIAK QILEKVPGDN DSNVSYSQDR YVFHVKRTDG LTVLCMAEET AGRRIPFAFL EDIHQRFVRT YGRAVHTALA
101: YAMNEEFSRV LSQQIDYYSN DPNADRINRI KGEMNQVRGV MIENIDKVLD RGERLELLVD KTANMQGNTF RFRKQARRFR SNVWWRNCKL TVLLILLLLV
201: IIYIAVAFLC HGPTLPSCI

Arabidopsis Description

VAMP711Vesicle-associated membrane protein 711 [Source:UniProtKB/Swiss-Prot;Acc:O49377]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.