Factsheet for Bra025661.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol, golgi, nucleus

Predictor Summary:

plastid 2
golgi 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra006372.1-P
Bra006952.1-P
Bra011325.1-P
Bra022073.1-P
Bra024989.1-P
Bra026434.1-P
Bra028535.1-P
Bra030034.1-P
Bra032817.1-P
Bra040067.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G39510.1	Bra030034.1-P	AT1G27300.1	21798944
AT5G39510.1	Bra032817.1-P	AT1G27300.1	21798944
AT5G39510.1	Bra006952.1-P	AT3G52850.1	10397763
AT5G39510.1	Bra028535.1-P	AT3G52850.1	10397763
AT5G39510.1	Bra026434.1-P	AT4G26455.1	21798944
AT5G39510.1	Bra011325.1-P	AT4G32150.1	24556575
AT5G39510.1	Bra040067.1-P	AT4G32150.1	24556575
AT5G39510.1	Bra006372.1-P	AT5G16830.1	10397763
AT5G39510.1	Bra022073.1-P	AT5G46860.1	12815100
AT5G39510.1	Bra024989.1-P	AT5G46860.1	12815100

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74445	Canola	cytosol, golgi, mitochondrion, nucleus, plastid	100.0	100.0
Bra040987.1-P	Field mustard	cytosol, golgi, nucleus	66.3	27.6
Bra036218.1-P	Field mustard	cytosol	59.78	24.89
AT5G39510.1	Thale cress	cytosol, golgi, nucleus	58.7	24.43
VIT_14s0108g01200.t01	Wine grape	cytosol	52.17	21.72
KRG93576	Soybean	cytosol	48.91	20.36
KRH18448	Soybean	endoplasmic reticulum	48.91	20.36
PGSC0003DMT400050219	Potato	cytosol	48.91	20.36
Solyc03g115760.2.1	Tomato	nucleus, plastid	48.91	20.36
KRH40042	Soybean	cytosol	41.3	16.74
Bra041108.1-P	Field mustard	cytosol	40.22	14.8

Protein Annotations

EnsemblPlants:Bra025661.1	EnsemblPlants:Bra025661.1-P	EnsemblPlantsGene:Bra025661	Gene3D:1.20.5.110	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR21230	PANTHER:PTHR21230:SF52	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002544976
UniProt:M4EA54	MapMan:35.2	:	:	:	:

Description

AT3G29100 (E=7e-015) VTI13, ATVTI13 | VTI13; SNARE binding / receptor

Coordinates

chrA04:+:7159883..7160271

Molecular Weight (calculated)

10232.6 Da

IEP (calculated)

11.656

GRAVY (calculated)

-0.249

Length

92 amino acids

Sequence
(BLAST)

1: MRSTDGLGRT TDRIKRLKSL ASQSSKTCTV RDSLPLLRTN DTLSGVDDNV GKSKKTLTGM TRRMNRNKWT IGAIITALVA AIILIFYFKL TK

Best Arabidopsis Sequence Match ( AT3G29100.2 )
(BLAST)

001: MDLEARNLPP NVKSSLLVKL REYKSDLNNF KTEVKRITSG NLNATARDEL LEAGMADTLT ASADQRSRLM MSTDHLGRTT DRIKDSRRTI LETEELGVSI
101: LQDLHGQRQS LLRAHETLHG VDDNVGKSKK ILTTMTRRMN RNKWTIGAII TVLVLAIIFI LYFKLTR

Arabidopsis Description

VTI13Vesicle transport v-SNARE 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.