Factsheet for Bra006372.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
vacuole 2
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, golgi, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	vacuole
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000090.1-P
Bra000316.1-P
Bra000454.1-P
Bra001457.1-P
Bra002880.1-P
Bra003015.1-P
Bra003231.1-P
Bra003512.1-P
Bra003821.1-P
Bra004442.1-P
Bra004455.1-P
Bra004775.1-P
Bra006289.1-P
Bra006952.1-P
Bra007224.1-P
Bra008279.1-P
Bra008713.1-P
Bra008797.1-P
Bra008803.1-P
Bra009978.1-P
Bra010045.1-P
Bra010436.1-P
Bra010455.1-P
Bra010982.1-P
Bra011325.1-P
Bra011624.1-P
Bra012490.1-P
Bra013225.1-P
Bra013905.1-P
Bra014387.1-P
Bra014705.1-P
Bra014967.1-P
Bra015145.1-P
Bra015953.1-P
Bra016579.1-P
Bra017103.1-P
Bra017723.1-P
Bra019148.1-P
Bra020601.1-P
Bra021101.1-P
Bra022073.1-P
Bra022697.1-P
Bra023511.1-P
Bra024215.1-P
Bra024481.1-P
Bra024770.1-P
Bra024989.1-P
Bra025661.1-P
Bra025862.1-P
Bra025940.1-P
Bra026074.1-P
Bra026272.1-P
Bra026455.1-P
Bra026727.1-P
Bra027257.1-P
Bra028325.1-P
Bra028535.1-P
Bra029296.1-P
Bra029592.1-P
Bra030317.1-P
Bra031007.1-P
Bra031166.1-P
Bra032828.1-P
Bra034692.1-P
Bra034693.1-P
Bra035582.1-P
Bra036111.1-P
Bra037242.1-P
Bra037694.1-P
Bra037696.1-P
Bra037920.1-P
Bra038424.1-P
Bra038734.1-P
Bra039911.1-P
Bra040067.1-P
Bra040115.1-P
Bra040280.1-P
Bra040415.1-P
Bra040987.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16830.1	Bra026074.1-P	AT1G16240.1	24556609
AT5G16830.1	Bra026727.1-P	AT1G16240.1	24556609
AT5G16830.1	Bra016579.1-P	AT1G17880.1	24556609
AT5G16830.1	Bra025940.1-P	AT1G17880.1	24556609
AT5G16830.1	Bra031007.1-P	AT1G17880.1	24556609
AT5G16830.1	Bra025862.1-P	AT1G20970.1	24556609
AT5G16830.1	Bra010982.1-P	AT1G25260.1	24556609
AT5G16830.1	Bra012490.1-P	AT1G25260.1	24556609
AT5G16830.1	Bra024770.1-P	AT1G25260.1	24556609
AT5G16830.1	Bra032828.1-P	AT1G27400.1	24556609
AT5G16830.1	Bra038424.1-P	AT1G31440.1	24556609
AT5G16830.1	Bra003821.1-P	AT1G73940.1	24556609
AT5G16830.1	Bra015953.1-P	AT1G73940.1	24556609
AT5G16830.1	Bra008279.1-P	AT1G76810.1	24556609
AT5G16830.1	Bra015145.1-P	AT2G04280.1	24556609
AT5G16830.1	Bra024481.1-P	AT2G18020.1	24556609
AT5G16830.1	Bra037242.1-P	AT2G18020.1	24556609
AT5G16830.1	Bra039911.1-P	AT2G18020.1	24556609
AT5G16830.1	Bra030317.1-P	AT2G21160.1	24556609
AT5G16830.1	Bra031166.1-P	AT2G21160.1	24556609
AT5G16830.1	Bra000090.1-P	AT2G38750.1	24556609
AT5G16830.1	Bra017103.1-P	AT2G38750.1	24556609
AT5G16830.1	Bra000316.1-P	AT2G43640.1	24556609
AT5G16830.1	Bra004775.1-P	AT2G43640.1	24556609
AT5G16830.1	Bra037694.1-P	AT2G43640.1	24556609
AT5G16830.1	Bra037696.1-P	AT2G43640.1	24556609
AT5G16830.1	Bra000454.1-P	AT2G47470.1	24556609
AT5G16830.1	Bra004455.1-P	AT2G47470.1	24556609
AT5G16830.1	Bra040115.1-P	AT3G04920.1	24556609
AT5G16830.1	Bra040415.1-P	AT3G04920.1	24556609
AT5G16830.1	Bra029592.1-P	AT3G06610.1	24556609
AT5G16830.1	Bra040280.1-P	AT3G06610.1	24556609
AT5G16830.1	Bra001457.1-P	AT3G12580.1	24556609
AT5G16830.1	Bra038734.1-P	AT3G12580.1	24556609
AT5G16830.1	Bra034692.1-P	AT3G13300.1	24556609
AT5G16830.1	Bra034693.1-P	AT3G13300.1	24556609
AT5G16830.1	Bra021101.1-P	AT3G15356.1	24556609
AT5G16830.1	Bra027257.1-P	AT3G15356.1	24556609
AT5G16830.1	Bra014967.1-P	AT3G23620.1	24556609
AT5G16830.1	Bra028325.1-P	AT3G23620.1	24556609
AT5G16830.1	Bra013225.1-P	AT3G25220.1	24556609
AT5G16830.1	Bra006952.1-P	AT3G52850.1	10557242
AT5G16830.1	Bra028535.1-P	AT3G52850.1	10557242
AT5G16830.1	Bra003231.1-P	AT3G56190.1	24556609
AT5G16830.1	Bra007224.1-P	AT3G56190.1	24556609
AT5G16830.1	Bra014705.1-P	AT3G56190.1	24556609
AT5G16830.1	Bra003512.1-P	AT3G62870.1	24556609
AT5G16830.1	Bra004442.1-P	AT3G62870.1	24556609
AT5G16830.1	Bra014387.1-P	AT3G62870.1	24556609
AT5G16830.1	Bra037920.1-P	AT4G10480.1	24556609
AT5G16830.1	Bra010436.1-P	AT4G26230.1	24556609
AT5G16830.1	Bra026455.1-P	AT4G26230.1	24556609
AT5G16830.1	Bra024215.1-P	AT4G28250.1	24556609
AT5G16830.1	Bra026272.1-P	AT4G28250.1	24556609
AT5G16830.1	Bra011325.1-P	AT4G32150.1	24556609
AT5G16830.1	Bra040067.1-P	AT4G32150.1	24556609
AT5G16830.1	Bra011624.1-P	AT4G35570.1	24556609
AT5G16830.1	Bra017723.1-P	AT4G35570.1	24556609
AT5G16830.1	Bra008803.1-P	AT5G13780.1	24556609
AT5G16830.1	Bra008797.1-P	AT5G13850.1	24556609
AT5G16830.1	Bra006289.1-P	AT5G15200.1	24556609
AT5G16830.1	Bra008713.1-P	AT5G15200.1	24556609
AT5G16830.1	Bra023511.1-P	AT5G15200.1	24556609
AT5G16830.1	Bra009978.1-P	AT5G27120.1	24556609
AT5G16830.1	Bra020601.1-P	AT5G27120.1	24556609
AT5G16830.1	Bra036111.1-P	AT5G27120.1	24556609
AT5G16830.1	Bra025661.1-P	AT5G39510.1	10397763
AT5G16830.1	Bra040987.1-P	AT5G39510.1	10397763
AT5G16830.1	Bra025661.1-P	AT5G39510.1	24556609
AT5G16830.1	Bra040987.1-P	AT5G39510.1	24556609
AT5G16830.1	Bra022073.1-P	AT5G46860.1	10557242
AT5G16830.1	Bra024989.1-P	AT5G46860.1	10557242
AT5G16830.1	Bra010455.1-P	AT5G52470.1	24556609
AT5G16830.1	Bra013905.1-P	AT5G52470.1	24556609
AT5G16830.1	Bra019148.1-P	AT5G52470.1	24556609
AT5G16830.1	Bra003015.1-P	AT5G54110.1	24556609
AT5G16830.1	Bra022697.1-P	AT5G54110.1	24556609
AT5G16830.1	Bra002880.1-P	AT5G55660.1	24556609
AT5G16830.1	Bra035582.1-P	AT5G55660.1	24556609
AT5G16830.1	Bra010045.1-P	AT5G61970.1	24556609
AT5G16830.1	Bra029296.1-P	AT5G61970.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78712	Canola	cytosol, plastid	99.64	99.64
Bra008592.1-P	Field mustard	cytosol, plastid	89.86	88.89
AT5G16830.1	Thale cress	cytosol, plastid	85.87	84.95
Bra022073.1-P	Field mustard	cytosol	64.49	66.67
Bra040178.1-P	Field mustard	cytosol	65.58	65.58
VIT_16s0039g01850.t01	Wine grape	cytosol	65.94	65.47
TraesCS3D01G180500.1	Wheat	cytosol	64.86	64.62
Bra024989.1-P	Field mustard	cytosol	63.04	64.44
TraesCS3A01G175000.1	Wheat	cytosol	64.49	64.26
HORVU3Hr1G035380.1	Barley	cytosol	64.13	63.9
Bra023256.1-P	Field mustard	cytosol	60.87	63.88
Bra012645.1-P	Field mustard	cytosol	64.13	63.67
GSMUA_Achr7P04850_001	Banana	cytosol	62.68	63.37
EES02705	Sorghum	cytosol	63.77	62.86
GSMUA_Achr1P15580_001	Banana	cytosol	61.59	62.27
Os01t0254900-01	Rice	plasma membrane	62.68	61.79
GSMUA_Achr4P20770_001	Banana	cytosol	60.87	61.54
GSMUA_Achr5P04090_001	Banana	cytosol	61.23	60.57
Solyc06g072760.2.1	Tomato	cytosol	53.99	52.65
EES05663	Sorghum	cytosol	51.09	52.61
Os02t0702800-01	Rice	cytosol	50.0	51.69
Zm00001d040286_P003	Maize	cytosol	55.8	51.51
HORVU6Hr1G068640.1	Barley	cytosol	49.64	51.5
HORVU6Hr1G041590.1	Barley	cytosol	49.64	51.5
Zm00001d017756_P001	Maize	extracellular	45.29	50.4
TraesCS6A01G271000.1	Wheat	cytosol	46.38	47.58
TraesCS6D01G244100.2	Wheat	cytosol	49.28	46.58
TraesCS6B01G298100.3	Wheat	cytosol	45.65	45.49
Zm00001d008333_P003	Maize	cytosol	50.36	42.77
PGSC0003DMT400069241	Potato	cytosol	40.58	42.11
Zm00001d039536_P001	Maize	cytosol	38.04	39.92

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.2	EnsemblPlantsGene:Bra006372	EnsemblPlants:Bra006372.1	EnsemblPlants:Bra006372.1-P
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005770	GO:GO:0005794	GO:GO:0006623
GO:GO:0006810	GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0030140	GO:GO:0045324	GO:GO:0061025	InterPro:IPR000727
InterPro:IPR001388	UniProt:M4CQ83	PFAM:PF05739	PFAM:PF14523	PRINTS:PR00219	ScanProsite:PS00914
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Synaptobrevin	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI000253FD62	SEG:seg	:	:	:	:

Description

AT5G16830 (E=3e-072) SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | SYP21 (SYNTAXIN OF PLANTS 21); SNAP receptor

Coordinates

chrA03:-:3237223..3239038

Molecular Weight (calculated)

30735.8 Da

IEP (calculated)

5.515

GRAVY (calculated)

-0.247

Length

276 amino acids

Sequence
(BLAST)

001: MSFQDLEAGS RFQQPNRGRQ QRPPSRGDPS QEVAAGIFRI STALNSFFRL VNSIGTPKDT LDLRDKLQKT RLQISELVKN TSAKLKEASE ADLHGAASPI
101: KKIADAKLAK DFQAVLKEFQ KAQRLAAERE ITYTPVVTID IPTSYNAQEL DTESLRTSQQ QTLLLQSRRQ EVVFLDNEIT FNEAIIEERE QGIREIQQQI
201: GEVNEIFKDL AVLVNDQGVM IDDISSNIDN SQAATSQATA QLRKAAKTQR ANSSLTCLLI LIFGIVLLIV IIVVLV

Best Arabidopsis Sequence Match ( AT5G16830.1 )
(BLAST)

001: MSFQDLEAGT RSPAPNRFTG GRQQRPSSRG DPSQEVAAGI FRISTAVNSF FRLVNSIGTP KDTLELRDKL QKTRLQISEL VKNTSAKLKE ASEADLHGSA
101: SQIKKIADAK LAKDFQSVLK EFQKAQRLAA EREITYTPVV TKEIPTSYNA PELDTESLRI SQQQALLLQS RRQEVVFLDN EITFNEAIIE EREQGIREIE
201: DQIRDVNGMF KDLALMVNHQ GNIVDDISSN LDNSHAATTQ ATVQLRKAAK TQRSNSSLTC LLILIFGIVL LIVIIVVLV

Arabidopsis Description

SYP21Syntaxin-21 [Source:UniProtKB/Swiss-Prot;Acc:Q39233]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.