Factsheet for Bra011624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75512	Canola	nucleus	100.0	100.0
AT4G35570.1	Thale cress	nucleus	59.57	67.2
Bra002073.1-P	Field mustard	nucleus	68.79	61.78
Bra017723.1-P	Field mustard	nucleus, plastid	89.36	59.43
KRH39434	Soybean	nucleus	55.32	54.93
KRH07880	Soybean	nucleus	53.19	53.96
Bra025838.1-P	Field mustard	nucleus, plastid	49.65	51.09
TraesCS6A01G253900.1	Wheat	nucleus	48.94	49.64
Os02t0670400-01	Rice	nucleus	50.35	48.97
TraesCS6D01G235400.1	Wheat	nucleus	48.23	48.92
TraesCS6B01G271600.1	Wheat	nucleus	48.23	48.92
Bra012244.1-P	Field mustard	nucleus, plastid	34.04	48.48
OQU85655	Sorghum	nucleus	45.39	48.12
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	65.25	38.33
KXG26906	Sorghum	nucleus	31.21	36.97
HORVU2Hr1G095890.3	Barley	nucleus, plastid	33.33	36.72
TraesCS2A01G404100.1	Wheat	nucleus	31.21	36.36
Zm00001d002659_P001	Maize	nucleus	31.21	35.77
Os04t0564600-01	Rice	nucleus	33.33	35.61
TraesCS2D01G401100.1	Wheat	nucleus	30.5	35.54
Bra012832.1-P	Field mustard	nucleus	39.72	35.22
Zm00001d051427_P002	Maize	nucleus	44.68	35.0
Zm00001d017555_P001	Maize	nucleus	42.55	34.48
TraesCS2B01G422000.1	Wheat	nucleus	29.08	34.17
HORVU6Hr1G064720.1	Barley	nucleus, plastid	48.94	30.67
Bra021911.1-P	Field mustard	nucleus	31.21	29.14
Bra026498.1-P	Field mustard	nucleus	39.72	22.76
Bra029371.1-P	Field mustard	nucleus	38.3	22.22
Bra009681.1-P	Field mustard	nucleus	23.4	20.75
Zm00001d031233_P001	Maize	vacuole	24.82	15.62

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra011624	EnsemblPlants:Bra011624.1	EnsemblPlants:Bra011624.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
UniProt:M4D567	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF222	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI0001FC88EF	SEG:seg	:	:	:

Description

AT2G17560 (E=9e-024) HMGB4, NFD4, NFD04 | HMGB4 (HIGH MOBILITY GROUP B 4); DNA binding / chromatin binding / structural constituent of chromatin / transcription factor

Coordinates

chrA01:+:1365173..1366080

Molecular Weight (calculated)

15391.7 Da

IEP (calculated)

9.296

GRAVY (calculated)

-1.326

Length

141 amino acids

Sequence
(BLAST)

001: MKGGETKAQS KSTDERLKTR GKKAGKKAAK DPNKPKRPPS AFFVFLEGFR KEFNLANPDN KSVGAVGKAA GAKWKSMTDE DKAPYVAKAE TKKTEYTKTM
101: QKYNMKLANG TSTAGDDDSD KSKSEVNDEA EGASEEEEDD D

Best Arabidopsis Sequence Match ( AT2G17560.1 )
(BLAST)

001: MKGGESKAEA TSTDQRLKTR GRKAGKKTKK DPNQPKRPPS AFFVFLEDFR KEFNLANPNN KSVATVGKAA GARWKAMTDE DKAPYVAKAE SRKTEYIKNV
101: QQYNLKLASG TNREEDDSDK SKSEVDEAVS EEEAEDDD

Arabidopsis Description

HMGB4High mobility group B protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q42344]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.