Factsheet for Bra029371.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46957	Canola	nucleus	99.18	99.18
Bra026498.1-P	Field mustard	nucleus	83.95	82.93
AT5G23420.1	Thale cress	nucleus, plastid	76.13	76.76
KRH75844	Soybean	cytosol	27.16	57.89
KRH36171	Soybean	nucleus	46.91	57.0
GSMUA_AchrUn_...	Banana	nucleus	46.5	56.78
Solyc04g008820.2.1	Tomato	nucleus	50.21	56.74
KRG90584	Soybean	cytosol, nucleus, plastid	47.33	55.02
PGSC0003DMT400065103	Potato	nucleus	50.62	50.62
VIT_10s0071g00870.t01	Wine grape	nucleus	48.15	48.95
Os08t0101100-01	Rice	nucleus	38.68	46.31
Zm00001d052749_P001	Maize	nucleus	38.68	44.34
TraesCS7B01G230000.1	Wheat	nucleus	38.68	43.72
TraesCS7A01G329300.1	Wheat	nucleus	38.27	43.06
TraesCS7D01G326200.1	Wheat	nucleus	38.27	43.06
EES14345	Sorghum	nucleus	38.27	42.08
Bra012244.1-P	Field mustard	nucleus, plastid	16.05	39.39
Bra009681.1-P	Field mustard	nucleus	25.51	38.99
Bra025838.1-P	Field mustard	nucleus, plastid	21.81	38.69
Bra011624.1-P	Field mustard	nucleus	22.22	38.3
Bra002073.1-P	Field mustard	nucleus	24.28	37.58
Bra021911.1-P	Field mustard	nucleus	18.93	30.46
HORVU7Hr1G078760.8	Barley	nucleus, plastid	33.74	28.28
Bra012832.1-P	Field mustard	nucleus	18.11	27.67
Bra037266.1-P	Field mustard	endoplasmic reticulum, vacuole	24.28	24.58
Bra017723.1-P	Field mustard	nucleus, plastid	20.58	23.58

Protein Annotations

Gene3D:1.10.30.10	MapMan:35.1	EnsemblPlantsGene:Bra029371	EnsemblPlants:Bra029371.1	EnsemblPlants:Bra029371.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:HMG_box_dom	InterPro:HMG_box_dom_sf	InterPro:IPR009071	InterPro:IPR036910
UniProt:M4EKQ4	PFAM:PF00505	PFscan:PS50118	PANTHER:PTHR13711	PANTHER:PTHR13711:SF147	SMART:SM00398
SUPFAM:SSF47095	UniParc:UPI0002545609	SEG:seg	:	:	:

Description

AT5G23420 (E=2e-054) HMGB6 | HMGB6; transcription factor

Coordinates

chrA02:+:25575702..25577407

Molecular Weight (calculated)

27135.0 Da

IEP (calculated)

4.725

GRAVY (calculated)

-1.309

Length

243 amino acids

Sequence
(BLAST)

001: MAGGRGSSKS TAPKARKRVE AESKPETTNN NNINTLLRAK DGSAFAKCEG CNKNVAVALI SMHDCSLDAK IRVNLEAQVV ETQTEAKKKP VERKKSTSDE
101: PKAKRLRKAK DDSKKKSSSS SNKPKRPLTA FFIFMADFRK TFKEENPDAG VKDVAKQGGE KWKSLDEEEK KVYLDKAAEL KAEYNKSLES SNDADEEEAD
201: DADEKQSDEA EEKQADDEET EENEAEKKEA EGKEEEDEIL DDY

Best Arabidopsis Sequence Match ( AT5G23420.1 )
(BLAST)

001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y

Arabidopsis Description

HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.