Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 3
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64875 | Canola | nucleus | 78.42 | 78.75 |
| CDY16851 | Canola | nucleus | 76.76 | 77.08 |
| CDY46957 | Canola | nucleus | 77.18 | 76.54 |
| Bra029371.1-P | Field mustard | nucleus | 76.76 | 76.13 |
| Bra026498.1-P | Field mustard | nucleus | 77.59 | 76.02 |
| CDY40795 | Canola | nucleus | 78.01 | 75.5 |
| Solyc04g008820.2.1 | Tomato | nucleus | 51.87 | 58.14 |
| KRH75844 | Soybean | cytosol | 26.56 | 56.14 |
| KRH36171 | Soybean | nucleus | 45.23 | 54.5 |
| GSMUA_AchrUn_... | Banana | nucleus | 44.81 | 54.27 |
| KRG90584 | Soybean | cytosol, nucleus, plastid | 46.06 | 53.11 |
| PGSC0003DMT400065103 | Potato | nucleus | 51.04 | 50.62 |
| Os08t0101100-01 | Rice | nucleus | 40.66 | 48.28 |
| VIT_10s0071g00870.t01 | Wine grape | nucleus | 46.89 | 47.28 |
| Zm00001d052749_P001 | Maize | nucleus | 38.17 | 43.4 |
| TraesCS7B01G230000.1 | Wheat | nucleus | 38.17 | 42.79 |
| TraesCS7A01G329300.1 | Wheat | nucleus | 37.76 | 42.13 |
| TraesCS7D01G326200.1 | Wheat | nucleus | 37.76 | 42.13 |
| EES14345 | Sorghum | nucleus | 37.76 | 41.18 |
| CDX80362 | Canola | nucleus | 25.31 | 37.65 |
| AT1G20693.1 | Thale cress | nucleus, plastid | 22.41 | 37.5 |
| Bra009681.1-P | Field mustard | nucleus | 24.07 | 36.48 |
| AT2G17560.1 | Thale cress | nucleus | 19.92 | 34.78 |
| CDX88025 | Canola | nucleus | 24.48 | 32.07 |
| AT1G20696.2 | Thale cress | nucleus, plastid | 19.5 | 31.97 |
| AT3G51880.2 | Thale cress | nucleus | 22.41 | 29.19 |
| AT4G35570.1 | Thale cress | nucleus | 14.94 | 28.8 |
| HORVU7Hr1G078760.8 | Barley | nucleus, plastid | 33.61 | 27.93 |
| AT2G34450.2 | Thale cress | nucleus, plastid | 16.18 | 25.66 |
Protein Annotations
| Gene3D:1.10.30.10 | MapMan:35.1 | EntrezGene:832408 | ProteinID:AED93164.1 | EMBL:AK118688 | ArrayExpress:AT5G23420 |
| EnsemblPlantsGene:AT5G23420 | RefSeq:AT5G23420 | TAIR:AT5G23420 | RefSeq:AT5G23420-TAIR-G | EnsemblPlants:AT5G23420.1 | TAIR:AT5G23420.1 |
| EMBL:AY086023 | ProteinID:BAB09558.1 | ncoils:Coil | GO:GO:0000741 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010197 | GO:GO:0016043 | GO:GO:0030154 | Symbol:HMGB6 |
| InterPro:HMG_box_dom | InterPro:HMG_box_dom_sf | InterPro:IPR009071 | InterPro:IPR036910 | RefSeq:NP_568431.1 | PFAM:PF00505 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50118 |
| PANTHER:PTHR13711 | PANTHER:PTHR13711:SF147 | UniProt:Q8LDF9 | SMART:SM00398 | SUPFAM:SSF47095 | UniParc:UPI00000AC56C |
| SEG:seg | : | : | : | : | : |
Description
HMGB7High mobility group B protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8LDF9]
Coordinates
chr5:-:7888461..7890355
Molecular Weight (calculated)
26982.8 Da
IEP (calculated)
4.549
GRAVY (calculated)
-1.269
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGPSTTSNA PKQRKRVEAE TSSNTSTTLR RAKDGSAFAL CEGCNKSVAV ALISMHNCSL DAKIRVNLEA QVVETQAEAK KKPAEKKKTT SDGPKPKRLK
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
101: KTNDEKKSSS TSNKPKRPLT AFFIFMSDFR KTFKSEHNGS LAKDAAKIGG EKWKSLTEEE KKVYLDKAAE LKAEYNKSLE SNDADEEEED EEKQSDDVDD
201: AEEKQVDDDD EVEEKEVENT DDDKKEAEGK EEEEEEILDD Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.